Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 AL591742.1-201ENST00000604433 565 ntBASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ZNF540Q8NDQ6 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
ZNF540Q8NDQ6 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 FP475955.4-201ENST00000623131 1990 ntBASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 FAM201B-201ENST00000458407 597 ntBASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 AC093525.10-201ENST00000625130 1569 ntBASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ZNF540Q8NDQ6 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms