Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 AC022211.2-201ENST00000585075 2527 ntBASIC11.94□□□□□ -0.5
LINC00643Q86TS7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 OVCH1-AS1-204ENST00000641955 5529 ntBASIC11.93□□□□□ -0.5
LINC00643Q86TS7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00643Q86TS7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 NARF-204ENST00000390006 1766 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 BX005040.4-201ENST00000637145 1518 ntBASIC11.92□□□□□ -0.5
LINC00643Q86TS7 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 MIR3665-201ENST00000578708 105 ntBASIC11.92□□□□□ -0.5
LINC00643Q86TS7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00643Q86TS7 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms