Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.38■□□□□ 0.69
USP39Q53GS9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.38■□□□□ 0.69
USP39Q53GS9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.38■□□□□ 0.69
USP39Q53GS9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
USP39Q53GS9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
USP39Q53GS9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.37■□□□□ 0.69
USP39Q53GS9 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
USP39Q53GS9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
USP39Q53GS9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.37■□□□□ 0.69
USP39Q53GS9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.37■□□□□ 0.69
USP39Q53GS9 TPM4P1-201ENST00000436100 807 ntBASIC19.37■□□□□ 0.69
USP39Q53GS9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
USP39Q53GS9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.37■□□□□ 0.69
USP39Q53GS9 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
USP39Q53GS9 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
USP39Q53GS9 AL023973.1-201ENST00000624619 620 ntBASIC19.37■□□□□ 0.69
USP39Q53GS9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.37■□□□□ 0.69
USP39Q53GS9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP39Q53GS9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
USP39Q53GS9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.36■□□□□ 0.69
USP39Q53GS9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.36■□□□□ 0.69
USP39Q53GS9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.36■□□□□ 0.69
USP39Q53GS9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.36■□□□□ 0.69
USP39Q53GS9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 AL441883.1-201ENST00000566170 1045 ntBASIC19.36■□□□□ 0.69
USP39Q53GS9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.36■□□□□ 0.69
USP39Q53GS9 AL121894.2-201ENST00000602977 491 ntBASIC19.36■□□□□ 0.69
USP39Q53GS9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.36■□□□□ 0.69
USP39Q53GS9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.36■□□□□ 0.69
USP39Q53GS9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP39Q53GS9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.36■□□□□ 0.69
USP39Q53GS9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
USP39Q53GS9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.35■□□□□ 0.69
USP39Q53GS9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.35■□□□□ 0.69
USP39Q53GS9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.35■□□□□ 0.69
USP39Q53GS9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.35■□□□□ 0.69
USP39Q53GS9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 AP000523.1-201ENST00000398242 1049 ntBASIC19.35■□□□□ 0.69
USP39Q53GS9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.35■□□□□ 0.69
USP39Q53GS9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
USP39Q53GS9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.35■□□□□ 0.69
USP39Q53GS9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP39Q53GS9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP39Q53GS9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP39Q53GS9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
USP39Q53GS9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP39Q53GS9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
USP39Q53GS9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms