Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH1Q08174 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCDH1Q08174 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH1Q08174 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 RPS2P4-201ENST00000476944 856 ntBASIC18.4■□□□□ 0.54
PCDH1Q08174 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH1Q08174 AP002982.1-201ENST00000492365 877 ntBASIC18.4■□□□□ 0.54
PCDH1Q08174 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
PCDH1Q08174 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 AF186192.3-201ENST00000583427 947 ntBASIC18.4■□□□□ 0.54
PCDH1Q08174 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PCDH1Q08174 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH1Q08174 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH1Q08174 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCDH1Q08174 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCDH1Q08174 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH1Q08174 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
PCDH1Q08174 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
PCDH1Q08174 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH1Q08174 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
PCDH1Q08174 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
PCDH1Q08174 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDH1Q08174 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.39■□□□□ 0.53
PCDH1Q08174 AC073195.1-201ENST00000607241 877 ntBASIC18.39■□□□□ 0.53
PCDH1Q08174 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 AL138781.2-201ENST00000617896 1843 ntBASIC18.39■□□□□ 0.53
PCDH1Q08174 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH1Q08174 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
PCDH1Q08174 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH1Q08174 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH1Q08174 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 PRORSD1P-201ENST00000295112 541 ntBASIC18.38■□□□□ 0.53
PCDH1Q08174 KRT18P29-201ENST00000397031 1267 ntBASIC18.38■□□□□ 0.53
PCDH1Q08174 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH1Q08174 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH1Q08174 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH1Q08174 PRSS44-201ENST00000515154 1146 ntBASIC18.38■□□□□ 0.53
PCDH1Q08174 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.38■□□□□ 0.53
PCDH1Q08174 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDH1Q08174 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH1Q08174 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH1Q08174 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.38■□□□□ 0.53
PCDH1Q08174 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
PCDH1Q08174 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH1Q08174 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDH1Q08174 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDH1Q08174 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 ABHD17AP1-201ENST00000358206 933 ntBASIC18.37■□□□□ 0.53
PCDH1Q08174 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH1Q08174 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.37■□□□□ 0.53
PCDH1Q08174 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.37■□□□□ 0.53
PCDH1Q08174 KRT16P1-201ENST00000399124 1418 ntBASIC18.37■□□□□ 0.53
PCDH1Q08174 AL135905.2-201ENST00000584934 1404 ntBASIC18.37■□□□□ 0.53
PCDH1Q08174 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH1Q08174 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDH1Q08174 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms