Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.94■□□□□ 0.78
HDAC4P56524 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.94■□□□□ 0.78
HDAC4P56524 TSPY21P-201ENST00000433481 731 ntBASIC19.94■□□□□ 0.78
HDAC4P56524 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.94■□□□□ 0.78
HDAC4P56524 AC008040.2-201ENST00000461049 708 ntBASIC19.94■□□□□ 0.78
HDAC4P56524 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.94■□□□□ 0.78
HDAC4P56524 AC091390.4-202ENST00000476426 537 ntBASIC19.94■□□□□ 0.78
HDAC4P56524 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.94■□□□□ 0.78
HDAC4P56524 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HDAC4P56524 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.94■□□□□ 0.78
HDAC4P56524 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC4P56524 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.94■□□□□ 0.78
HDAC4P56524 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.93■□□□□ 0.78
HDAC4P56524 BX323043.1-201ENST00000641006 1765 ntBASIC19.93■□□□□ 0.78
HDAC4P56524 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC4P56524 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC4P56524 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC4P56524 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 MESTP1-201ENST00000404287 994 ntBASIC19.93■□□□□ 0.78
HDAC4P56524 AC011506.1-201ENST00000474329 610 ntBASIC19.93■□□□□ 0.78
HDAC4P56524 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.93■□□□□ 0.78
HDAC4P56524 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.93■□□□□ 0.78
HDAC4P56524 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HDAC4P56524 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC4P56524 FP475955.4-201ENST00000623131 1990 ntBASIC19.93■□□□□ 0.78
HDAC4P56524 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.93■□□□□ 0.78
HDAC4P56524 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HDAC4P56524 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HDAC4P56524 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC4P56524 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.93■□□□□ 0.78
HDAC4P56524 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC4P56524 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.92■□□□□ 0.78
HDAC4P56524 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.92■□□□□ 0.78
HDAC4P56524 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.92■□□□□ 0.78
HDAC4P56524 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
HDAC4P56524 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.92■□□□□ 0.78
HDAC4P56524 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.92■□□□□ 0.78
HDAC4P56524 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC4P56524 FEM1AP3-201ENST00000403722 1741 ntBASIC19.92■□□□□ 0.78
HDAC4P56524 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HDAC4P56524 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC4P56524 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC4P56524 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC4P56524 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.92■□□□□ 0.78
HDAC4P56524 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HDAC4P56524 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 AC004951.3-201ENST00000418645 1148 ntBASIC19.91■□□□□ 0.78
HDAC4P56524 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 B3GAT3P1-201ENST00000471720 806 ntBASIC19.91■□□□□ 0.78
HDAC4P56524 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.91■□□□□ 0.78
HDAC4P56524 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.91■□□□□ 0.78
HDAC4P56524 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.91■□□□□ 0.78
HDAC4P56524 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.91■□□□□ 0.78
HDAC4P56524 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HDAC4P56524 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.91■□□□□ 0.78
HDAC4P56524 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.91■□□□□ 0.78
HDAC4P56524 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HDAC4P56524 KRT8P11-201ENST00000409686 1436 ntBASIC19.91■□□□□ 0.78
HDAC4P56524 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.91■□□□□ 0.78
HDAC4P56524 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC4P56524 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms