Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.94■□□□□ 0.46
SOX3P41225 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
SOX3P41225 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SOX3P41225 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
SOX3P41225 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.94■□□□□ 0.46
SOX3P41225 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SOX3P41225 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.94■□□□□ 0.46
SOX3P41225 TSPY15P-201ENST00000457163 923 ntBASIC17.94■□□□□ 0.46
SOX3P41225 NUDT16P1-203ENST00000513809 620 ntBASIC17.94■□□□□ 0.46
SOX3P41225 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.94■□□□□ 0.46
SOX3P41225 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.94■□□□□ 0.46
SOX3P41225 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 Z82202.1-201ENST00000623446 1880 ntBASIC17.94■□□□□ 0.46
SOX3P41225 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.94■□□□□ 0.46
SOX3P41225 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
SOX3P41225 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SOX3P41225 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.93■□□□□ 0.46
SOX3P41225 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.93■□□□□ 0.46
SOX3P41225 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.93■□□□□ 0.46
SOX3P41225 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.93■□□□□ 0.46
SOX3P41225 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.93■□□□□ 0.46
SOX3P41225 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.93■□□□□ 0.46
SOX3P41225 HLA-A-209ENST00000638375 975 ntBASIC17.93■□□□□ 0.46
SOX3P41225 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.93■□□□□ 0.46
SOX3P41225 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SOX3P41225 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SOX3P41225 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.92■□□□□ 0.46
SOX3P41225 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
SOX3P41225 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.92■□□□□ 0.46
SOX3P41225 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.92■□□□□ 0.46
SOX3P41225 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.92■□□□□ 0.46
SOX3P41225 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.92■□□□□ 0.46
SOX3P41225 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.92■□□□□ 0.46
SOX3P41225 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SOX3P41225 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.92■□□□□ 0.46
SOX3P41225 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.92■□□□□ 0.46
SOX3P41225 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.92■□□□□ 0.46
SOX3P41225 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SOX3P41225 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SOX3P41225 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX3P41225 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.92■□□□□ 0.46
SOX3P41225 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX3P41225 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SOX3P41225 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.91■□□□□ 0.46
SOX3P41225 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SOX3P41225 BX088651.1-201ENST00000540551 451 ntBASIC17.91■□□□□ 0.46
SOX3P41225 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX3P41225 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX3P41225 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 REXO1L10P-201ENST00000615707 1290 ntBASIC17.91■□□□□ 0.46
SOX3P41225 REXO1L12P-201ENST00000622156 912 ntBASIC17.91■□□□□ 0.46
SOX3P41225 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.91■□□□□ 0.46
SOX3P41225 AL031985.4-201ENST00000642138 673 ntBASIC17.91■□□□□ 0.46
SOX3P41225 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SOX3P41225 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms