Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.21■□□□□ 0.51
MSX2P35548 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.21■□□□□ 0.51
MSX2P35548 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.21■□□□□ 0.51
MSX2P35548 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
MSX2P35548 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MSX2P35548 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.21■□□□□ 0.51
MSX2P35548 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 ABALON-201ENST00000629058 1903 ntBASIC18.21■□□□□ 0.51
MSX2P35548 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.21■□□□□ 0.51
MSX2P35548 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MSX2P35548 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
MSX2P35548 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
MSX2P35548 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
MSX2P35548 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.2■□□□□ 0.5
MSX2P35548 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MSX2P35548 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.2■□□□□ 0.5
MSX2P35548 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX2P35548 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
MSX2P35548 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
MSX2P35548 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.19■□□□□ 0.5
MSX2P35548 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
MSX2P35548 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.19■□□□□ 0.5
MSX2P35548 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX2P35548 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX2P35548 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.19■□□□□ 0.5
MSX2P35548 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
MSX2P35548 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
MSX2P35548 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 CNN2P6-201ENST00000439038 900 ntBASIC18.18■□□□□ 0.5
MSX2P35548 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.18■□□□□ 0.5
MSX2P35548 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
MSX2P35548 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.18■□□□□ 0.5
MSX2P35548 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms