Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.58■□□□□ 0.56
PCNAP12004 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.58■□□□□ 0.56
PCNAP12004 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.58■□□□□ 0.56
PCNAP12004 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.58■□□□□ 0.56
PCNAP12004 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.58■□□□□ 0.56
PCNAP12004 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
PCNAP12004 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.58■□□□□ 0.56
PCNAP12004 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 TEX21P-204ENST00000641479 1693 ntBASIC18.57■□□□□ 0.56
PCNAP12004 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 LINC01465-201ENST00000408887 1940 ntBASIC18.57■□□□□ 0.56
PCNAP12004 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.57■□□□□ 0.56
PCNAP12004 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PCNAP12004 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 POU5F1P3-201ENST00000428824 1078 ntBASIC18.57■□□□□ 0.56
PCNAP12004 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.57■□□□□ 0.56
PCNAP12004 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 AC128676.1-201ENST00000454392 318 ntBASIC18.57■□□□□ 0.56
PCNAP12004 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
PCNAP12004 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PCNAP12004 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCNAP12004 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.57■□□□□ 0.56
PCNAP12004 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.57■□□□□ 0.56
PCNAP12004 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.56■□□□□ 0.56
PCNAP12004 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
PCNAP12004 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
PCNAP12004 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.56■□□□□ 0.56
PCNAP12004 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.56■□□□□ 0.56
PCNAP12004 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.56■□□□□ 0.56
PCNAP12004 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.56■□□□□ 0.56
PCNAP12004 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PCNAP12004 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.56■□□□□ 0.56
PCNAP12004 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
PCNAP12004 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
PCNAP12004 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCNAP12004 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PCNAP12004 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
PCNAP12004 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.55■□□□□ 0.56
PCNAP12004 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
PCNAP12004 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.55■□□□□ 0.56
PCNAP12004 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCNAP12004 FAM201B-201ENST00000458407 597 ntBASIC18.55■□□□□ 0.56
PCNAP12004 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.55■□□□□ 0.56
PCNAP12004 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms