Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HOXC4P09017 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HOXC4P09017 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC4P09017 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 GPAT2P1-201ENST00000444924 1672 ntBASIC18.63■□□□□ 0.57
HOXC4P09017 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 AC009947.2-201ENST00000444014 672 ntBASIC18.63■□□□□ 0.57
HOXC4P09017 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXC4P09017 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 MYC-208ENST00000641036 567 ntBASIC18.63■□□□□ 0.57
HOXC4P09017 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXC4P09017 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HOXC4P09017 AC141586.3-201ENST00000562166 1838 ntBASIC18.63■□□□□ 0.57
HOXC4P09017 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HOXC4P09017 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HOXC4P09017 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.62■□□□□ 0.57
HOXC4P09017 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.62■□□□□ 0.57
HOXC4P09017 AL441883.1-201ENST00000566170 1045 ntBASIC18.62■□□□□ 0.57
HOXC4P09017 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
HOXC4P09017 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
HOXC4P09017 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.62■□□□□ 0.57
HOXC4P09017 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HOXC4P09017 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HOXC4P09017 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC4P09017 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HOXC4P09017 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC4P09017 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC4P09017 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC4P09017 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC4P09017 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC4P09017 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC4P09017 MCCD1P1-208ENST00000445732 328 ntBASIC18.61■□□□□ 0.57
HOXC4P09017 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC4P09017 AC092647.4-201ENST00000457211 535 ntBASIC18.61■□□□□ 0.57
HOXC4P09017 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC4P09017 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC4P09017 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 AL023973.1-201ENST00000624619 620 ntBASIC18.61■□□□□ 0.57
HOXC4P09017 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC4P09017 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
HOXC4P09017 FP475955.4-201ENST00000623131 1990 ntBASIC18.61■□□□□ 0.57
HOXC4P09017 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HOXC4P09017 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HOXC4P09017 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms