Protein–RNA interactions for Protein: O60925

PFDN1, Prefoldin subunit 1, humanhuman

Predictions only

Length 122 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1O60925 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PFDN1O60925 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PFDN1O60925 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PFDN1O60925 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PFDN1O60925 AC108860.2-201ENST00000562760 2183 ntBASIC17.11■□□□□ 0.33
PFDN1O60925 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.1■□□□□ 0.33
PFDN1O60925 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.1■□□□□ 0.33
PFDN1O60925 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PFDN1O60925 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 CROCCP2-202ENST00000412962 2773 ntBASIC17.1■□□□□ 0.33
PFDN1O60925 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.1■□□□□ 0.33
PFDN1O60925 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PFDN1O60925 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.1■□□□□ 0.33
PFDN1O60925 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PFDN1O60925 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PFDN1O60925 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PFDN1O60925 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 AC068587.6-202ENST00000641839 5619 ntBASIC17.09■□□□□ 0.33
PFDN1O60925 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 PCDHA1-201ENST00000378133 2726 ntBASIC17.09■□□□□ 0.33
PFDN1O60925 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.09■□□□□ 0.33
PFDN1O60925 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.09■□□□□ 0.33
PFDN1O60925 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.09■□□□□ 0.33
PFDN1O60925 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.09■□□□□ 0.33
PFDN1O60925 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 FP475955.4-201ENST00000623131 1990 ntBASIC17.09■□□□□ 0.33
PFDN1O60925 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PFDN1O60925 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PFDN1O60925 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.09■□□□□ 0.33
PFDN1O60925 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PFDN1O60925 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.08■□□□□ 0.33
PFDN1O60925 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.08■□□□□ 0.33
PFDN1O60925 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.08■□□□□ 0.33
PFDN1O60925 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PFDN1O60925 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PFDN1O60925 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.08■□□□□ 0.32
PFDN1O60925 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PFDN1O60925 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PFDN1O60925 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PFDN1O60925 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PFDN1O60925 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PFDN1O60925 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PFDN1O60925 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms