Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
LMX1BO60663 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 AC104417.2-201ENST00000562989 1793 ntBASIC16.77■□□□□ 0.28
LMX1BO60663 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
LMX1BO60663 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
LMX1BO60663 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
LMX1BO60663 KRASP1-201ENST00000407852 552 ntBASIC16.77■□□□□ 0.28
LMX1BO60663 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.77■□□□□ 0.28
LMX1BO60663 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.77■□□□□ 0.28
LMX1BO60663 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
LMX1BO60663 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1BO60663 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1BO60663 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1BO60663 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.77■□□□□ 0.27
LMX1BO60663 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.77■□□□□ 0.27
LMX1BO60663 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1BO60663 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.27
LMX1BO60663 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.77■□□□□ 0.27
LMX1BO60663 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1BO60663 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.77■□□□□ 0.27
LMX1BO60663 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
LMX1BO60663 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.77■□□□□ 0.27
LMX1BO60663 FP475955.4-201ENST00000623131 1990 ntBASIC16.77■□□□□ 0.27
LMX1BO60663 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
LMX1BO60663 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
LMX1BO60663 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1BO60663 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
LMX1BO60663 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.76■□□□□ 0.27
LMX1BO60663 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.76■□□□□ 0.27
LMX1BO60663 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1BO60663 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LMX1BO60663 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.76■□□□□ 0.27
LMX1BO60663 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.76■□□□□ 0.27
LMX1BO60663 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1BO60663 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1BO60663 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1BO60663 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1BO60663 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LMX1BO60663 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LMX1BO60663 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.75■□□□□ 0.27
LMX1BO60663 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.75■□□□□ 0.27
LMX1BO60663 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
LMX1BO60663 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.75■□□□□ 0.27
LMX1BO60663 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms