Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 AL031598.1-201ENST00000561511 1773 ntBASIC18.98■□□□□ 0.63
PHGDHO43175 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 FEM1AP3-201ENST00000403722 1741 ntBASIC18.98■□□□□ 0.63
PHGDHO43175 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
PHGDHO43175 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.98■□□□□ 0.63
PHGDHO43175 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 PRKY-204ENST00000533551 1019 ntBASIC18.98■□□□□ 0.63
PHGDHO43175 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.98■□□□□ 0.63
PHGDHO43175 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PHGDHO43175 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PHGDHO43175 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PHGDHO43175 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.97■□□□□ 0.63
PHGDHO43175 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
PHGDHO43175 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PHGDHO43175 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.97■□□□□ 0.63
PHGDHO43175 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.97■□□□□ 0.63
PHGDHO43175 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.97■□□□□ 0.63
PHGDHO43175 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
PHGDHO43175 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PHGDHO43175 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.97■□□□□ 0.63
PHGDHO43175 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
PHGDHO43175 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PHGDHO43175 NBPF21P-201ENST00000425093 1451 ntBASIC18.97■□□□□ 0.63
PHGDHO43175 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.96■□□□□ 0.63
PHGDHO43175 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 AL512353.2-201ENST00000448759 1962 ntBASIC18.96■□□□□ 0.63
PHGDHO43175 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 RNA5SP413-201ENST00000516373 109 ntBASIC18.96■□□□□ 0.63
PHGDHO43175 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.96■□□□□ 0.63
PHGDHO43175 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 WIZP1-201ENST00000531444 2299 ntBASIC18.96■□□□□ 0.63
PHGDHO43175 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.96■□□□□ 0.63
PHGDHO43175 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PHGDHO43175 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.96■□□□□ 0.63
PHGDHO43175 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.96■□□□□ 0.63
PHGDHO43175 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PHGDHO43175 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
PHGDHO43175 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PHGDHO43175 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms