Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 DUX4L17-201ENST00000557360 1267 ntBASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC85CA6NKD9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC85CA6NKD9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 FGFR3P6-201ENST00000457012 610 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AC005829.1-201ENST00000570002 483 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 MTDHP3-201ENST00000594186 672 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AP001269.4-201ENST00000609611 512 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AF228730.6-201ENST00000641497 218 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AC084121.3-201ENST00000641716 218 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 AC105233.6-201ENST00000642093 218 ntBASIC21.16■□□□□ 0.98
CCDC85CA6NKD9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 HLA-J-201ENST00000462773 1622 ntBASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 AC254562.1-201ENST00000417586 456 ntBASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC85CA6NKD9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC85CA6NKD9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC85CA6NKD9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC85CA6NKD9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC85CA6NKD9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 RN7SL606P-201ENST00000472779 293 ntBASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 AC011840.4-201ENST00000578471 627 ntBASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 GPR32P1-201ENST00000601788 811 ntBASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC85CA6NKD9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms