Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 AP003097.1-201ENST00000530657 1135 ntBASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 AC069544.1-201ENST00000609399 999 ntBASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 AC090164.3-201ENST00000610780 2143 ntBASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TCRBV7S3A2A0A539 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TCRBV7S3A2A0A539 ANO7L1-203ENST00000602586 1720 ntBASIC19.39■□□□□ 0.7
TCRBV7S3A2A0A539 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.39■□□□□ 0.7
TCRBV7S3A2A0A539 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.39■□□□□ 0.7
TCRBV7S3A2A0A539 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TCRBV7S3A2A0A539 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 AC083906.6-201ENST00000641366 219 ntBASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 KRT8P41-201ENST00000533985 1514 ntBASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TCRBV7S3A2A0A539 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TCRBV7S3A2A0A539 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TCRBV7S3A2A0A539 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.38■□□□□ 0.69
TCRBV7S3A2A0A539 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TCRBV7S3A2A0A539 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TCRBV7S3A2A0A539 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms