Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNA5SP284-201ENST00000384547 118 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 RPL36P18-201ENST00000419316 318 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 RN7SKP282-201ENST00000516824 299 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 AC013283.1-201ENST00000557282 492 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 U1.41-201ENST00000617626 165 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 AC007114.2-201ENST00000576014 4281 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 AC011447.6-201ENST00000623510 2598 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 RNU6-600P-201ENST00000362524 99 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 RNA5SP110-201ENST00000362638 115 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AL445584.1-201ENST00000431451 330 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 GLRXP3-201ENST00000470810 321 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC108145.1-201ENST00000503770 153 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC010598.1-201ENST00000510378 103 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 RN7SKP238-201ENST00000516483 249 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 IGKV3D-25-201ENST00000519599 235 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 CYCSP25-201ENST00000525280 316 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 MTND6P33-201ENST00000571794 183 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 MIR3134-201ENST00000579433 74 ntBASIC9.4□□□□□ -0.9
SENP3Q9H4L4 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
SENP3Q9H4L4 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC9.4□□□□□ -0.91
SENP3Q9H4L4 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
SENP3Q9H4L4 ANKRD18EP-201ENST00000405487 2632 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 RNU6-140P-201ENST00000384566 108 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 AL590383.1-201ENST00000428602 75 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 AC025458.1-201ENST00000506046 166 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 AC140658.3-201ENST00000567603 271 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 MIR1273E-201ENST00000581165 102 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 AC008507.3-201ENST00000585753 472 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 FKBP1AP1-201ENST00000594588 318 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 UBE2Q2P6-201ENST00000612666 153 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 AC116447.1-201ENST00000613153 453 ntBASIC9.39□□□□□ -0.91
SENP3Q9H4L4 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 SELE-203ENST00000367775 3389 ntTSL 5 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SENP3Q9H4L4 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 RNU6-411P-201ENST00000384451 107 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 MIR130B-202ENST00000385018 82 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 RNU2-49P-201ENST00000410666 184 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 BX276092.6-201ENST00000430476 250 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 BX276092.8-201ENST00000455722 250 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 AP001486.1-201ENST00000463339 476 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 RN7SL382P-201ENST00000482631 282 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 RNA5SP340-201ENST00000517132 107 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 RN7SKP234-201ENST00000517173 224 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 IGKV2OR2-10-201ENST00000613976 311 ntBASIC9.38□□□□□ -0.91
SENP3Q9H4L4 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SENP3Q9H4L4 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms