RNA–Protein interactions for RNA: ENST00000412145.5

PTPN3-203, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-203ENST00000412145 PELP1Q8IZL8 1130 aaKnown RBP12.34□□□□□ -0.43
PTPN3-203ENST00000412145 DCAF8L2P0C7V8 631 aa12.32□□□□□ -0.44
PTPN3-203ENST00000412145 MYT1Q01538 1121 aa11.82□□□□□ -0.52
PTPN3-203ENST00000412145 CCER1Q8TC90 406 aaPredicted RBP11.71□□□□□ -0.53
PTPN3-203ENST00000412145 FAM9AQ8IZU1 332 aaPredicted RBP11.53□□□□□ -0.56
PTPN3-203ENST00000412145 ERICH6Q7L0X2 663 aa11.47□□□□□ -0.57
PTPN3-203ENST00000412145 APLP2Q06481 763 aa11.44□□□□□ -0.58
PTPN3-203ENST00000412145 CENPBP07199 599 aaPredicted RBP11.39□□□□□ -0.59
PTPN3-203ENST00000412145 YTHDC1Q96MU7 727 aaKnown RBP11.38□□□□□ -0.59
PTPN3-203ENST00000412145 ZEB1P37275 1124 aaPredicted RBP11.33□□□□□ -0.6
PTPN3-203ENST00000412145 SUPT5HO00267 1087 aaKnown RBP11.27□□□□□ -0.61
PTPN3-203ENST00000412145 NISCHQ9Y2I1 1504 aa11.25□□□□□ -0.61
PTPN3-203ENST00000412145 NEFLP07196 543 aa11.18□□□□□ -0.62
PTPN3-203ENST00000412145 SHROOM4Q9ULL8 1493 aa11.13□□□□□ -0.63
PTPN3-203ENST00000412145 EHMT2Q96KQ7 1210 aa11.06□□□□□ -0.64
PTPN3-203ENST00000412145 DAXXQ9UER7 740 aaPredicted RBP11□□□□□ -0.65
PTPN3-203ENST00000412145 TTBK1Q5TCY1 1321 aaPredicted RBP10.96□□□□□ -0.65
PTPN3-203ENST00000412145 RTL5Q5HYW3 569 aaPredicted RBP10.74□□□□□ -0.69
PTPN3-203ENST00000412145 PCGF6Q9BYE7 350 aa10.73□□□□□ -0.69
PTPN3-203ENST00000412145 ZNF316A6NFI3 1004 aaPredicted RBP10.67□□□□□ -0.7
PTPN3-203ENST00000412145 RANGAP1P46060 587 aaPredicted RBP10.65□□□□□ -0.7
PTPN3-203ENST00000412145 ATP1B4Q9UN42 357 aaPredicted RBP10.64□□□□□ -0.71
PTPN3-203ENST00000412145 TRIM41Q8WV44 630 aa10.6□□□□□ -0.71
PTPN3-203ENST00000412145 UBTFP17480 764 aaKnown RBP10.52□□□□□ -0.72
PTPN3-203ENST00000412145 TRIM26Q12899 539 aaPredicted RBP10.49□□□□□ -0.73
PTPN3-203ENST00000412145 CLSPNQ9HAW4 1339 aa10.48□□□□□ -0.73
PTPN3-203ENST00000412145 MYT1LQ9UL68 1186 aa10.48□□□□□ -0.73
PTPN3-203ENST00000412145 GLIPR1L2Q4G1C9 344 aa10.47□□□□□ -0.73
PTPN3-203ENST00000412145 ZBTB47Q9UFB7 747 aaPredicted RBP10.42□□□□□ -0.74
PTPN3-203ENST00000412145 NEFMP07197 916 aa10.42□□□□□ -0.74
PTPN3-203ENST00000412145 ANP32BQ92688 251 aaKnown RBP10.37□□□□□ -0.75
PTPN3-203ENST00000412145 HRCP23327 699 aa10.31□□□□□ -0.76
PTPN3-203ENST00000412145 CDK11AQ9UQ88 783 aaPredicted RBP10.3□□□□□ -0.76
PTPN3-203ENST00000412145 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.3□□□□□ -0.76
PTPN3-203ENST00000412145 HNRNPUL2Q1KMD3 747 aaKnown RBP10.3□□□□□ -0.76
PTPN3-203ENST00000412145 ANP32AP39687 249 aaKnown RBP10.24□□□□□ -0.77
PTPN3-203ENST00000412145 PABPN1Q86U42 306 aaKnown RBP eCLIP10.22□□□□□ -0.77
PTPN3-203ENST00000412145 POLR3GLQ9BT43 218 aa10.2□□□□□ -0.78
PTPN3-203ENST00000412145 ABCC9O60706 1549 aa10.18□□□□□ -0.78
PTPN3-203ENST00000412145 DIEXFQ68CQ4 756 aaKnown RBP10.17□□□□□ -0.78
PTPN3-203ENST00000412145 ANP32CO43423 234 aa10.16□□□□□ -0.78
PTPN3-203ENST00000412145 UPF2Q9HAU5 1272 aaKnown RBP10.16□□□□□ -0.78
PTPN3-203ENST00000412145 CHIC1Q5VXU3 224 aa10.15□□□□□ -0.78
PTPN3-203ENST00000412145 SLC4A1APQ9BWU0 796 aaKnown RBP10.14□□□□□ -0.79
PTPN3-203ENST00000412145 CANXP27824 592 aaKnown RBP10.14□□□□□ -0.79
PTPN3-203ENST00000412145 ANP32EQ9BTT0 268 aa10.12□□□□□ -0.79
PTPN3-203ENST00000412145 EIF5BO60841 1220 aaKnown RBP10.12□□□□□ -0.79
PTPN3-203ENST00000412145 PPARGC1BQ86YN6 1023 aaKnown RBP10.11□□□□□ -0.79
PTPN3-203ENST00000412145 ITGAEP38570 1179 aa10.08□□□□□ -0.8
PTPN3-203ENST00000412145 CDK11BP21127 795 aaKnown RBP10.06□□□□□ -0.8
PTPN3-203ENST00000412145 TNNT2P45379 298 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-203ENST00000412145 HSP90AA1P07900 732 aaKnown RBP10.05□□□□□ -0.8
PTPN3-203ENST00000412145 FBLN2P98095 1184 aa10.03□□□□□ -0.8
PTPN3-203ENST00000412145 ACIN1Q9UKV3 1341 aaKnown RBP10.02□□□□□ -0.81
PTPN3-203ENST00000412145 TRIM44Q96DX7 344 aaPredicted RBP9.98□□□□□ -0.81
PTPN3-203ENST00000412145 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.97□□□□□ -0.81
PTPN3-203ENST00000412145 TRIM52Q96A61 297 aa9.95□□□□□ -0.82
PTPN3-203ENST00000412145 FAM50AQ14320 339 aaKnown RBP9.91□□□□□ -0.82
PTPN3-203ENST00000412145 GTF3C3Q9Y5Q9 886 aa9.91□□□□□ -0.82
PTPN3-203ENST00000412145 CNGB1Q14028 1251 aaPredicted RBP9.91□□□□□ -0.82
PTPN3-203ENST00000412145 DDRGK1Q96HY6 314 aa9.9□□□□□ -0.82
PTPN3-203ENST00000412145 GOLGA6L22H0YM25 854 aa9.9□□□□□ -0.82
PTPN3-203ENST00000412145 NCLP19338 710 aaKnown RBP9.89□□□□□ -0.83
PTPN3-203ENST00000412145 BECN1Q14457 450 aa9.89□□□□□ -0.83
PTPN3-203ENST00000412145 MYH16Q9H6N6 1097 aa9.86□□□□□ -0.83
PTPN3-203ENST00000412145 LOC105371045A0A1W2PR82 267 aa9.84□□□□□ -0.83
PTPN3-203ENST00000412145 GOLGA6L6A8MZA4 724 aa9.84□□□□□ -0.83
PTPN3-203ENST00000412145 NRDCO43847 1150 aa9.82□□□□□ -0.84
PTPN3-203ENST00000412145 L1TD1Q5T7N2 865 aaKnown RBP9.82□□□□□ -0.84
PTPN3-203ENST00000412145 ERICH6BQ5W0A0 696 aa9.82□□□□□ -0.84
PTPN3-203ENST00000412145 SLC24A1O60721 1099 aa9.82□□□□□ -0.84
PTPN3-203ENST00000412145 ZRSR1Q15695 479 aaKnown RBP9.81□□□□□ -0.84
PTPN3-203ENST00000412145 BCANQ96GW7 911 aa9.79□□□□□ -0.84
PTPN3-203ENST00000412145 NEUROD1Q13562 356 aa9.78□□□□□ -0.84
PTPN3-203ENST00000412145 TONSLQ96HA7 1378 aa9.77□□□□□ -0.85
PTPN3-203ENST00000412145 CHMP4BQ9H444 224 aaKnown RBP9.77□□□□□ -0.85
PTPN3-203ENST00000412145 CASC1Q6TDU7 716 aa9.77□□□□□ -0.85
PTPN3-203ENST00000412145 ZNF326Q5BKZ1 582 aaKnown RBP9.76□□□□□ -0.85
PTPN3-203ENST00000412145 PLPPR3Q6T4P5 718 aa9.76□□□□□ -0.85
PTPN3-203ENST00000412145 ARID3CA6NKF2 412 aa9.76□□□□□ -0.85
PTPN3-203ENST00000412145 NPM2Q86SE8 214 aaKnown RBP9.75□□□□□ -0.85
PTPN3-203ENST00000412145 ESF1Q9H501 851 aaKnown RBP9.75□□□□□ -0.85
PTPN3-203ENST00000412145 CFAP44Q96MT7 982 aa9.74□□□□□ -0.85
PTPN3-203ENST00000412145 CCDC136Q96JN2 1154 aa9.74□□□□□ -0.85
PTPN3-203ENST00000412145 P3H3Q8IVL6 736 aa9.74□□□□□ -0.85
PTPN3-203ENST00000412145 PPM1GO15355 546 aaPredicted RBP9.73□□□□□ -0.85
PTPN3-203ENST00000412145 USP35Q9P2H5 1018 aa9.73□□□□□ -0.85
PTPN3-203ENST00000412145 NPM1P06748 294 aaKnown RBP eCLIP9.72□□□□□ -0.85
PTPN3-203ENST00000412145 CHAF1AQ13111 956 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-203ENST00000412145 ARID4BQ4LE39 1312 aaPredicted RBP9.71□□□□□ -0.85
PTPN3-203ENST00000412145 WDR43Q15061 677 aaKnown RBP eCLIP9.7□□□□□ -0.86
PTPN3-203ENST00000412145 PTMSP20962 102 aa9.7□□□□□ -0.86
PTPN3-203ENST00000412145 PTMAP06454 111 aaKnown RBP9.68□□□□□ -0.86
PTPN3-203ENST00000412145 MS4A1P11836 297 aa9.66□□□□□ -0.86
PTPN3-203ENST00000412145 FKBP8Q14318 412 aa9.65□□□□□ -0.86
PTPN3-203ENST00000412145 ZNF777Q9ULD5 760 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-203ENST00000412145 TMC1Q8TDI8 760 aa9.65□□□□□ -0.86
PTPN3-203ENST00000412145 DCAF1Q9Y4B6 1507 aa9.65□□□□□ -0.87
PTPN3-203ENST00000412145 CDCA8Q53HL2 280 aa9.64□□□□□ -0.87
PTPN3-203ENST00000412145 HNRNPUQ00839 825 aaKnown RBP eCLIP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms