Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
SENP3Q9H4L4 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.87
SENP3Q9H4L4 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.87
SENP3Q9H4L4 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 FAM13A-218ENST00000511976 3579 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 SNORA27.1-201ENST00000362604 124 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 RNU6-363P-201ENST00000362895 105 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 SNORA18.2-201ENST00000383865 132 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 RNU2-40P-201ENST00000410833 196 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 RNU6-603P-201ENST00000411403 107 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 AL035422.1-201ENST00000414193 397 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 AC012308.1-201ENST00000451232 178 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 RPL10P17-201ENST00000453852 316 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 MIR3618-201ENST00000580330 88 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 SNORD84-203ENST00000584275 78 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 HSPE1P19-201ENST00000603327 295 ntBASIC9.64□□□□□ -0.87
SENP3Q9H4L4 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 ZNF200-201ENST00000396868 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
SENP3Q9H4L4 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 RNU6-271P-201ENST00000363858 105 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 RNU6-173P-201ENST00000364215 104 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 AL031121.1-201ENST00000406553 254 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 RPS26P39-201ENST00000469206 341 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 ZNF519P4-201ENST00000514008 125 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 snoU109.6-201ENST00000516831 118 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 MIR4489-201ENST00000578869 62 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 ELOCP29-201ENST00000588193 334 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 AC022217.4-201ENST00000604389 163 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 MIR1255B1-201ENST00000636325 63 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 CABYR-202ENST00000399481 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 AL672167.1-204ENST00000641875 3017 ntBASIC9.63□□□□□ -0.87
SENP3Q9H4L4 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SENP3Q9H4L4 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 MIR323A-201ENST00000362199 86 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 RNU6-837P-201ENST00000391056 108 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 AC009127.1-201ENST00000467090 155 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 RNU7-172P-201ENST00000517125 64 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 SAA3P-201ENST00000533267 365 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 AC091133.5-201ENST00000603088 301 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 U73479.1-201ENST00000618062 168 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 uc_338.13-201ENST00000618243 179 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 Y_RNA.788-201ENST00000622394 112 ntBASIC9.62□□□□□ -0.87
SENP3Q9H4L4 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
SENP3Q9H4L4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 AC131649.2-201ENST00000624925 4439 ntBASIC9.61□□□□□ -0.87
SENP3Q9H4L4 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 RNA5SP242-201ENST00000364171 118 ntBASIC9.61□□□□□ -0.87
SENP3Q9H4L4 GM2AP2-201ENST00000491764 562 ntBASIC9.61□□□□□ -0.87
SENP3Q9H4L4 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 MIR4700-201ENST00000578311 74 ntBASIC9.61□□□□□ -0.87
SENP3Q9H4L4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 AC136601.2-201ENST00000604356 474 ntBASIC9.61□□□□□ -0.87
SENP3Q9H4L4 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC9.61□□□□□ -0.87
SENP3Q9H4L4 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms