Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 AC090164.3-201ENST00000610780 2143 ntBASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHA3Q9Y5H8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 PRKY-204ENST00000533551 1019 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 AL160286.2-201ENST00000567150 934 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 AC008403.3-201ENST00000598924 454 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 HLA-A-209ENST00000638375 975 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 AC083906.6-201ENST00000641366 219 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 NBPF21P-201ENST00000425093 1451 ntBASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
PCDHA3Q9Y5H8 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 C1QL1P1-201ENST00000568105 661 ntBASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
PCDHA3Q9Y5H8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.95■□□□□ 0.79
PCDHA3Q9Y5H8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 AC092666.2-201ENST00000613287 246 ntBASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHA3Q9Y5H8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms