Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 AC011498.5-201ENST00000592027 486 ntBASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 AL691432.2-201ENST00000607222 2038 ntBASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 AC020907.5-201ENST00000624372 1936 ntBASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 AC009237.14-201ENST00000609975 1594 ntBASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 AL845331.1-201ENST00000424978 1190 ntBASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 FDX1P1-201ENST00000449115 551 ntBASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 BX276092.5-203ENST00000456199 560 ntBASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 AL121672.3-201ENST00000608644 468 ntBASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.18■□□□□ 0.34
SNRNP40Q96DI7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC016734.2-201ENST00000624325 1377 ntBASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC004870.1-201ENST00000315132 882 ntBASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 AC111152.3-201ENST00000569699 673 ntBASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SNRNP40Q96DI7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 MIR3180-1-201ENST00000580374 94 ntBASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 MIR3180-3-201ENST00000584616 94 ntBASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 AC024243.1-201ENST00000609234 778 ntBASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SNRNP40Q96DI7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms