Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTP4A1Q93096 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 PNMA6B-201ENST00000538162 1200 ntBASIC17.16■□□□□ 0.34
PTP4A1Q93096 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTP4A1Q93096 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTP4A1Q93096 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTP4A1Q93096 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PTP4A1Q93096 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 TUBB8P6-201ENST00000436895 1288 ntBASIC17.14■□□□□ 0.33
PTP4A1Q93096 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.14■□□□□ 0.33
PTP4A1Q93096 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 AL121829.2-201ENST00000620908 328 ntBASIC17.14■□□□□ 0.33
PTP4A1Q93096 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 AL390961.4-201ENST00000623958 2535 ntBASIC17.14■□□□□ 0.33
PTP4A1Q93096 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PTP4A1Q93096 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTP4A1Q93096 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 NOC2LP1-202ENST00000452600 2235 ntBASIC17.13■□□□□ 0.33
PTP4A1Q93096 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.13■□□□□ 0.33
PTP4A1Q93096 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
PTP4A1Q93096 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTP4A1Q93096 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms