Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RTF1Q92541 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
RTF1Q92541 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC24.95■■□□□ 1.58
RTF1Q92541 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC24.95■■□□□ 1.58
RTF1Q92541 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
RTF1Q92541 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 TP73-202ENST00000354437 2140 ntTSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
RTF1Q92541 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC24.94■■□□□ 1.58
RTF1Q92541 ARMC10P1-201ENST00000313754 855 ntBASIC24.94■■□□□ 1.58
RTF1Q92541 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC24.94■■□□□ 1.58
RTF1Q92541 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
RTF1Q92541 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.94■■□□□ 1.58
RTF1Q92541 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.94■■□□□ 1.58
RTF1Q92541 AC141257.4-201ENST00000634557 245 ntBASIC24.94■■□□□ 1.58
RTF1Q92541 AC136944.6-201ENST00000634818 245 ntBASIC24.94■■□□□ 1.58
RTF1Q92541 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.94■■□□□ 1.58
RTF1Q92541 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
RTF1Q92541 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.93■■□□□ 1.58
RTF1Q92541 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
RTF1Q92541 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
RTF1Q92541 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
RTF1Q92541 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.93■■□□□ 1.58
RTF1Q92541 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.93■■□□□ 1.58
RTF1Q92541 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
RTF1Q92541 AC117947.1-201ENST00000427448 529 ntBASIC24.93■■□□□ 1.58
RTF1Q92541 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC24.93■■□□□ 1.58
RTF1Q92541 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.93■■□□□ 1.58
RTF1Q92541 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
RTF1Q92541 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 GOLGA6L5P-202ENST00000515341 1828 ntBASIC24.93■■□□□ 1.58
RTF1Q92541 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RTF1Q92541 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.92■■□□□ 1.58
RTF1Q92541 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC24.92■■□□□ 1.58
RTF1Q92541 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC24.92■■□□□ 1.58
RTF1Q92541 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.92■■□□□ 1.58
RTF1Q92541 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC24.92■■□□□ 1.58
RTF1Q92541 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.92■■□□□ 1.58
RTF1Q92541 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC24.92■■□□□ 1.58
RTF1Q92541 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC24.92■■□□□ 1.58
RTF1Q92541 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC24.92■■□□□ 1.58
RTF1Q92541 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 AC139887.4-201ENST00000607877 719 ntBASIC24.92■■□□□ 1.58
RTF1Q92541 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 BID-204ENST00000399767 2129 ntTSL 2 BASIC24.92■■□□□ 1.58
RTF1Q92541 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24.92■■□□□ 1.58
RTF1Q92541 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RTF1Q92541 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.92■■□□□ 1.58
RTF1Q92541 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.91■■□□□ 1.58
RTF1Q92541 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.91■■□□□ 1.58
RTF1Q92541 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
RTF1Q92541 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
RTF1Q92541 COX11P1-201ENST00000489116 835 ntBASIC24.91■■□□□ 1.58
RTF1Q92541 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
RTF1Q92541 RMI2-205ENST00000576027 818 ntTSL 2 BASIC24.91■■□□□ 1.58
RTF1Q92541 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.91■■□□□ 1.58
RTF1Q92541 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RTF1Q92541 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms