Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CCDC89Q8N998 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC89Q8N998 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC89Q8N998 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC89Q8N998 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC89Q8N998 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC89Q8N998 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 TUBB8P6-201ENST00000436895 1288 ntBASIC19.82■□□□□ 0.76
CCDC89Q8N998 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 AL121829.2-201ENST00000620908 328 ntBASIC19.82■□□□□ 0.76
CCDC89Q8N998 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC89Q8N998 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC89Q8N998 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 KRT18P16-201ENST00000510337 1294 ntBASIC19.81■□□□□ 0.76
CCDC89Q8N998 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC89Q8N998 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC89Q8N998 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AC008687.6-201ENST00000596318 630 ntBASIC19.8■□□□□ 0.76
CCDC89Q8N998 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AL109923.1-201ENST00000618799 583 ntBASIC19.8■□□□□ 0.76
CCDC89Q8N998 AC133041.1-202ENST00000642053 222 ntBASIC19.8■□□□□ 0.76
CCDC89Q8N998 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC89Q8N998 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 AC009113.1-201ENST00000570267 2443 ntBASIC19.8■□□□□ 0.76
CCDC89Q8N998 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC89Q8N998 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 AC079598.2-202ENST00000546624 1451 ntBASIC19.79■□□□□ 0.76
CCDC89Q8N998 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC89Q8N998 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC89Q8N998 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC89Q8N998 AC104581.1-202ENST00000635932 2618 ntBASIC19.79■□□□□ 0.76
CCDC89Q8N998 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CCDC89Q8N998 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC89Q8N998 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms