Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VPS8Q8N3P4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
VPS8Q8N3P4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
VPS8Q8N3P4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC29.89■■■□□ 2.37
VPS8Q8N3P4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.37
VPS8Q8N3P4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 CR769767.2-201ENST00000622735 460 ntBASIC29.88■■■□□ 2.37
VPS8Q8N3P4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
VPS8Q8N3P4 AC036111.1-201ENST00000533973 1582 ntBASIC29.87■■■□□ 2.37
VPS8Q8N3P4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 AC117947.1-201ENST00000427448 529 ntBASIC29.87■■■□□ 2.37
VPS8Q8N3P4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 WWOX-216ENST00000569818 525 ntBASIC29.87■■■□□ 2.37
VPS8Q8N3P4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 AC141257.4-201ENST00000634557 245 ntBASIC29.87■■■□□ 2.37
VPS8Q8N3P4 AC136944.6-201ENST00000634818 245 ntBASIC29.87■■■□□ 2.37
VPS8Q8N3P4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
VPS8Q8N3P4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 AL023284.2-201ENST00000405850 579 ntBASIC29.86■■■□□ 2.37
VPS8Q8N3P4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 AC116562.4-201ENST00000641316 2276 ntBASIC29.86■■■□□ 2.37
VPS8Q8N3P4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
VPS8Q8N3P4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 AC010331.1-201ENST00000611423 582 ntBASIC29.85■■■□□ 2.37
VPS8Q8N3P4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC29.85■■■□□ 2.37
VPS8Q8N3P4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 CD70-202ENST00000423145 881 ntTSL 2 BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 DUX4L26-201ENST00000489078 1255 ntBASIC29.84■■■□□ 2.37
VPS8Q8N3P4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VPS8Q8N3P4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC29.84■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms