Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 KRT18P16-201ENST00000510337 1294 ntBASIC20.26■□□□□ 0.83
RNF135Q8IUD6 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RNF135Q8IUD6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 YBX1P10-201ENST00000444752 975 ntBASIC20.25■□□□□ 0.83
RNF135Q8IUD6 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 AL353719.1-201ENST00000566847 864 ntBASIC20.25■□□□□ 0.83
RNF135Q8IUD6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF135Q8IUD6 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RNF135Q8IUD6 AL162377.1-201ENST00000618844 1793 ntBASIC20.23■□□□□ 0.83
RNF135Q8IUD6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 ZNF444P1-201ENST00000559497 298 ntBASIC20.23■□□□□ 0.83
RNF135Q8IUD6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 AC023511.2-201ENST00000618803 211 ntBASIC20.23■□□□□ 0.83
RNF135Q8IUD6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 CR769767.2-201ENST00000622735 460 ntBASIC20.23■□□□□ 0.83
RNF135Q8IUD6 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.23■□□□□ 0.83
RNF135Q8IUD6 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF135Q8IUD6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms