Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC58Q4VC31 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AC010980.2-201ENST00000587099 1412 ntBASIC17.06■□□□□ 0.32
CCDC58Q4VC31 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AL356309.3-201ENST00000624132 1934 ntBASIC17.06■□□□□ 0.32
CCDC58Q4VC31 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AC124067.4-201ENST00000519691 2379 ntBASIC17.06■□□□□ 0.32
CCDC58Q4VC31 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC58Q4VC31 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 AC009113.1-201ENST00000570267 2443 ntBASIC17.05■□□□□ 0.32
CCDC58Q4VC31 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC58Q4VC31 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AC135050.7-201ENST00000624508 2218 ntBASIC17.04■□□□□ 0.32
CCDC58Q4VC31 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 ZNRF2P3-201ENST00000424200 374 ntBASIC17.04■□□□□ 0.32
CCDC58Q4VC31 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AC090164.3-201ENST00000610780 2143 ntBASIC17.04■□□□□ 0.32
CCDC58Q4VC31 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms