Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 Z83836.1-201ENST00000624605 1642 ntBASIC20.29■□□□□ 0.84
CHD9Q3L8U1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AC233702.3-201ENST00000578656 1387 ntBASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AL773604.1-201ENST00000617417 272 ntBASIC20.28■□□□□ 0.84
CHD9Q3L8U1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 AL391807.1-203ENST00000604392 2365 ntBASIC20.28■□□□□ 0.84
CHD9Q3L8U1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 LINC00265-3P-201ENST00000447588 903 ntBASIC20.28■□□□□ 0.84
CHD9Q3L8U1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHD9Q3L8U1 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHD9Q3L8U1 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 KRT18P58-201ENST00000527480 1120 ntBASIC20.27■□□□□ 0.83
CHD9Q3L8U1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHD9Q3L8U1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 AC022898.2-201ENST00000616822 1312 ntBASIC20.26■□□□□ 0.83
CHD9Q3L8U1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHD9Q3L8U1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 AC092720.2-201ENST00000602388 1665 ntBASIC20.25■□□□□ 0.83
CHD9Q3L8U1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD9Q3L8U1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms