Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCNA1P78396 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCNA1P78396 GPAT2P1-201ENST00000444924 1672 ntBASIC21.75■■□□□ 1.07
CCNA1P78396 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.75■■□□□ 1.07
CCNA1P78396 GABARAPL3-202ENST00000624044 1851 ntBASIC21.75■■□□□ 1.07
CCNA1P78396 AL391422.3-201ENST00000603791 2761 ntBASIC21.75■■□□□ 1.07
CCNA1P78396 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCNA1P78396 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CCNA1P78396 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.74■■□□□ 1.07
CCNA1P78396 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
CCNA1P78396 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.74■■□□□ 1.07
CCNA1P78396 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.74■■□□□ 1.07
CCNA1P78396 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.74■■□□□ 1.07
CCNA1P78396 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.74■■□□□ 1.07
CCNA1P78396 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.74■■□□□ 1.07
CCNA1P78396 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.74■■□□□ 1.07
CCNA1P78396 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
CCNA1P78396 AL121672.3-201ENST00000608644 468 ntBASIC21.74■■□□□ 1.07
CCNA1P78396 AC024243.1-201ENST00000609234 778 ntBASIC21.74■■□□□ 1.07
CCNA1P78396 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CCNA1P78396 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCNA1P78396 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.74■■□□□ 1.07
CCNA1P78396 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CCNA1P78396 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.73■■□□□ 1.07
CCNA1P78396 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.73■■□□□ 1.07
CCNA1P78396 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 AC007375.3-201ENST00000600936 2314 ntBASIC21.73■■□□□ 1.07
CCNA1P78396 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CCNA1P78396 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CCNA1P78396 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.73■■□□□ 1.07
CCNA1P78396 BX276092.5-203ENST00000456199 560 ntBASIC21.73■■□□□ 1.07
CCNA1P78396 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.73■■□□□ 1.07
CCNA1P78396 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.73■■□□□ 1.07
CCNA1P78396 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.73■■□□□ 1.07
CCNA1P78396 PRELID1P1-202ENST00000567272 903 ntBASIC21.73■■□□□ 1.07
CCNA1P78396 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.73■■□□□ 1.07
CCNA1P78396 AC011498.5-201ENST00000592027 486 ntBASIC21.73■■□□□ 1.07
CCNA1P78396 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CCNA1P78396 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.73■■□□□ 1.07
CCNA1P78396 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CCNA1P78396 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCNA1P78396 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 AL023284.2-201ENST00000405850 579 ntBASIC21.72■■□□□ 1.07
CCNA1P78396 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 TSSC2-201ENST00000450217 709 ntBASIC21.72■■□□□ 1.07
CCNA1P78396 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.72■■□□□ 1.07
CCNA1P78396 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.72■■□□□ 1.07
CCNA1P78396 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCNA1P78396 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
CCNA1P78396 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.71■■□□□ 1.07
CCNA1P78396 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.71■■□□□ 1.07
CCNA1P78396 AC036111.1-201ENST00000533973 1582 ntBASIC21.71■■□□□ 1.07
CCNA1P78396 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CCNA1P78396 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 MCCD1P1-208ENST00000445732 328 ntBASIC21.71■■□□□ 1.07
CCNA1P78396 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 MIR3180-5-201ENST00000583743 153 ntBASIC21.71■■□□□ 1.07
CCNA1P78396 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCNA1P78396 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms