Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.15■□□□□ 0.5
LIM2P55344 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.15■□□□□ 0.5
LIM2P55344 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LIM2P55344 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.15■□□□□ 0.5
LIM2P55344 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIM2P55344 AC093503.3-201ENST00000624917 2352 ntBASIC18.15■□□□□ 0.5
LIM2P55344 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIM2P55344 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.14■□□□□ 0.5
LIM2P55344 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIM2P55344 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
LIM2P55344 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
LIM2P55344 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LIM2P55344 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LIM2P55344 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 AC004951.3-201ENST00000418645 1148 ntBASIC18.14■□□□□ 0.49
LIM2P55344 TSPY7P-201ENST00000431358 1114 ntBASIC18.14■□□□□ 0.49
LIM2P55344 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 SNORA78-201ENST00000459373 127 ntBASIC18.14■□□□□ 0.49
LIM2P55344 AC011506.1-201ENST00000474329 610 ntBASIC18.14■□□□□ 0.49
LIM2P55344 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LIM2P55344 AC026471.5-201ENST00000615068 467 ntBASIC18.14■□□□□ 0.49
LIM2P55344 MIR6786-201ENST00000616843 113 ntBASIC18.14■□□□□ 0.49
LIM2P55344 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LIM2P55344 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LIM2P55344 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.14■□□□□ 0.49
LIM2P55344 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIM2P55344 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.13■□□□□ 0.49
LIM2P55344 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.13■□□□□ 0.49
LIM2P55344 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
LIM2P55344 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.13■□□□□ 0.49
LIM2P55344 MESTP1-201ENST00000404287 994 ntBASIC18.13■□□□□ 0.49
LIM2P55344 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.13■□□□□ 0.49
LIM2P55344 AL355355.2-201ENST00000442321 338 ntBASIC18.13■□□□□ 0.49
LIM2P55344 B3GAT3P1-201ENST00000471720 806 ntBASIC18.13■□□□□ 0.49
LIM2P55344 AC091390.4-202ENST00000476426 537 ntBASIC18.13■□□□□ 0.49
LIM2P55344 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.13■□□□□ 0.49
LIM2P55344 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 AC116562.2-201ENST00000507042 360 ntBASIC18.13■□□□□ 0.49
LIM2P55344 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.13■□□□□ 0.49
LIM2P55344 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.13■□□□□ 0.49
LIM2P55344 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 AC141586.3-201ENST00000562166 1838 ntBASIC18.13■□□□□ 0.49
LIM2P55344 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.13■□□□□ 0.49
LIM2P55344 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 FSCN1P1-201ENST00000568912 1481 ntBASIC18.13■□□□□ 0.49
LIM2P55344 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.13■□□□□ 0.49
LIM2P55344 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIM2P55344 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.12■□□□□ 0.49
LIM2P55344 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.12■□□□□ 0.49
LIM2P55344 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.12■□□□□ 0.49
LIM2P55344 AC008040.2-201ENST00000461049 708 ntBASIC18.12■□□□□ 0.49
LIM2P55344 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.12■□□□□ 0.49
LIM2P55344 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.12■□□□□ 0.49
LIM2P55344 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 AC011298.2-201ENST00000617989 482 ntBASIC18.12■□□□□ 0.49
LIM2P55344 AC130371.2-201ENST00000619443 611 ntBASIC18.12■□□□□ 0.49
LIM2P55344 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms