Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 AC104187.1-201ENST00000607510 612 ntBASIC14.36□□□□□ -0.11
FOXA3P55318 MIR6084-201ENST00000622012 110 ntBASIC14.36□□□□□ -0.11
FOXA3P55318 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14.35□□□□□ -0.11
FOXA3P55318 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC14.35□□□□□ -0.11
FOXA3P55318 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 PBX2P1-201ENST00000493219 1291 ntBASIC14.35□□□□□ -0.11
FOXA3P55318 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA3P55318 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.35□□□□□ -0.11
FOXA3P55318 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC14.35□□□□□ -0.11
FOXA3P55318 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA3P55318 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA3P55318 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA3P55318 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
FOXA3P55318 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA3P55318 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA3P55318 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA3P55318 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA3P55318 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
FOXA3P55318 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA3P55318 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.34□□□□□ -0.11
FOXA3P55318 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA3P55318 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.34□□□□□ -0.11
FOXA3P55318 AC019069.1-201ENST00000610008 1333 ntBASIC14.34□□□□□ -0.11
FOXA3P55318 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA3P55318 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA3P55318 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.11
FOXA3P55318 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.33□□□□□ -0.11
FOXA3P55318 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA3P55318 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA3P55318 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
FOXA3P55318 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA3P55318 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.33□□□□□ -0.11
FOXA3P55318 ABALON-201ENST00000629058 1903 ntBASIC14.33□□□□□ -0.11
FOXA3P55318 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA3P55318 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.33□□□□□ -0.11
FOXA3P55318 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC14.33□□□□□ -0.12
FOXA3P55318 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
FOXA3P55318 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.33□□□□□ -0.12
FOXA3P55318 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 EDA-201ENST00000338901 1233 ntBASIC14.33□□□□□ -0.12
FOXA3P55318 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms