Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSX2P35548 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSX2P35548 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.24■□□□□ 0.51
MSX2P35548 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 CYP2T3P-201ENST00000601990 817 ntBASIC18.24■□□□□ 0.51
MSX2P35548 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 AC139713.2-201ENST00000641328 2723 ntBASIC18.24■□□□□ 0.51
MSX2P35548 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.24■□□□□ 0.51
MSX2P35548 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.24■□□□□ 0.51
MSX2P35548 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSX2P35548 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.23■□□□□ 0.51
MSX2P35548 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.23■□□□□ 0.51
MSX2P35548 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
MSX2P35548 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 HTR7P1-202ENST00000624664 4411 ntBASIC18.23■□□□□ 0.51
MSX2P35548 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
MSX2P35548 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 AC104417.2-201ENST00000562989 1793 ntBASIC18.23■□□□□ 0.51
MSX2P35548 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.23■□□□□ 0.51
MSX2P35548 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.23■□□□□ 0.51
MSX2P35548 C2orf69P4-201ENST00000565394 541 ntBASIC18.23■□□□□ 0.51
MSX2P35548 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.23■□□□□ 0.51
MSX2P35548 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.23■□□□□ 0.51
MSX2P35548 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 ANO7L1-203ENST00000602586 1720 ntBASIC18.23■□□□□ 0.51
MSX2P35548 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
MSX2P35548 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSX2P35548 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 TFP1-202ENST00000475455 1573 ntBASIC18.22■□□□□ 0.51
MSX2P35548 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.22■□□□□ 0.51
MSX2P35548 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.22■□□□□ 0.51
MSX2P35548 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.22■□□□□ 0.51
MSX2P35548 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MSX2P35548 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MSX2P35548 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MSX2P35548 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 AC068338.2-201ENST00000563278 1430 ntBASIC18.22■□□□□ 0.51
MSX2P35548 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSX2P35548 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.22■□□□□ 0.51
MSX2P35548 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MSX2P35548 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.21■□□□□ 0.51
MSX2P35548 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX2P35548 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms