Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.31■□□□□ 0.68
RPA3P35244 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.31■□□□□ 0.68
RPA3P35244 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RPA3P35244 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.31■□□□□ 0.68
RPA3P35244 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.31■□□□□ 0.68
RPA3P35244 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RPA3P35244 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.31■□□□□ 0.68
RPA3P35244 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPA3P35244 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.31■□□□□ 0.68
RPA3P35244 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.31■□□□□ 0.68
RPA3P35244 PCDHB18P-201ENST00000524813 2368 ntBASIC19.3■□□□□ 0.68
RPA3P35244 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 AL512353.2-201ENST00000448759 1962 ntBASIC19.3■□□□□ 0.68
RPA3P35244 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 CD99P1-205ENST00000527459 561 ntBASIC19.3■□□□□ 0.68
RPA3P35244 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.3■□□□□ 0.68
RPA3P35244 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.3■□□□□ 0.68
RPA3P35244 SOX15-203ENST00000570788 1093 ntBASIC19.3■□□□□ 0.68
RPA3P35244 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.3■□□□□ 0.68
RPA3P35244 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.3■□□□□ 0.68
RPA3P35244 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPA3P35244 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RPA3P35244 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.29■□□□□ 0.68
RPA3P35244 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.29■□□□□ 0.68
RPA3P35244 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.29■□□□□ 0.68
RPA3P35244 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
RPA3P35244 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.29■□□□□ 0.68
RPA3P35244 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RPA3P35244 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.29■□□□□ 0.68
RPA3P35244 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPA3P35244 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RPA3P35244 AL354751.1-201ENST00000412768 1863 ntBASIC19.28■□□□□ 0.68
RPA3P35244 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.28■□□□□ 0.68
RPA3P35244 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RPA3P35244 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.28■□□□□ 0.68
RPA3P35244 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPA3P35244 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms