Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD3P31249 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD3P31249 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 ADM-207ENST00000530439 1839 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXD3P31249 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXD3P31249 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXD3P31249 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HOXD3P31249 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
HOXD3P31249 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 SLC25A1P4-201ENST00000567977 778 ntBASIC14.79□□□□□ -0.04
HOXD3P31249 WWOX-216ENST00000569818 525 ntBASIC14.79□□□□□ -0.04
HOXD3P31249 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD3P31249 DGCR10-201ENST00000609839 495 ntBASIC14.79□□□□□ -0.04
HOXD3P31249 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD3P31249 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HOXD3P31249 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HOXD3P31249 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 AC104417.2-201ENST00000562989 1793 ntBASIC14.78□□□□□ -0.04
HOXD3P31249 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD3P31249 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HOXD3P31249 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HOXD3P31249 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD3P31249 AC130371.2-201ENST00000619443 611 ntBASIC14.78□□□□□ -0.04
HOXD3P31249 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD3P31249 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD3P31249 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC14.77□□□□□ -0.04
HOXD3P31249 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD3P31249 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.77□□□□□ -0.04
HOXD3P31249 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD3P31249 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD3P31249 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC14.77□□□□□ -0.04
HOXD3P31249 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD3P31249 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.77□□□□□ -0.04
HOXD3P31249 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
HOXD3P31249 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD3P31249 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXD3P31249 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXD3P31249 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HOXD3P31249 FAM207BP-201ENST00000447172 505 ntBASIC14.77□□□□□ -0.05
HOXD3P31249 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HOXD3P31249 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.77□□□□□ -0.05
HOXD3P31249 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.77□□□□□ -0.05
HOXD3P31249 AC006011.2-201ENST00000621313 1158 ntBASIC14.77□□□□□ -0.05
HOXD3P31249 AL158211.5-201ENST00000623583 2518 ntBASIC14.77□□□□□ -0.05
HOXD3P31249 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXD3P31249 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.77□□□□□ -0.05
HOXD3P31249 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC14.77□□□□□ -0.05
HOXD3P31249 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXD3P31249 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms