Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.76■■□□□ 1.07
COL11A1P12107 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.76■■□□□ 1.07
COL11A1P12107 AC012313.10-201ENST00000623509 926 ntBASIC21.76■■□□□ 1.07
COL11A1P12107 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL11A1P12107 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.76■■□□□ 1.07
COL11A1P12107 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.76■■□□□ 1.07
COL11A1P12107 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.76■■□□□ 1.07
COL11A1P12107 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.76■■□□□ 1.07
COL11A1P12107 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.76■■□□□ 1.07
COL11A1P12107 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
COL11A1P12107 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.76■■□□□ 1.07
COL11A1P12107 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.76■■□□□ 1.07
COL11A1P12107 RASA4DP-201ENST00000460726 1199 ntBASIC21.76■■□□□ 1.07
COL11A1P12107 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL11A1P12107 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.76■■□□□ 1.07
COL11A1P12107 NPAP1P7-201ENST00000613027 823 ntBASIC21.76■■□□□ 1.07
COL11A1P12107 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL11A1P12107 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.75■■□□□ 1.07
COL11A1P12107 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.75■■□□□ 1.07
COL11A1P12107 AC140113.3-201ENST00000605663 199 ntBASIC21.75■■□□□ 1.07
COL11A1P12107 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COL11A1P12107 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL11A1P12107 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL11A1P12107 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
COL11A1P12107 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.74■■□□□ 1.07
COL11A1P12107 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.74■■□□□ 1.07
COL11A1P12107 AC092597.1-201ENST00000487352 616 ntBASIC21.74■■□□□ 1.07
COL11A1P12107 AL136038.3-201ENST00000561909 1096 ntBASIC21.74■■□□□ 1.07
COL11A1P12107 MIR3180-5-201ENST00000583743 153 ntBASIC21.74■■□□□ 1.07
COL11A1P12107 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.74■■□□□ 1.07
COL11A1P12107 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
COL11A1P12107 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
COL11A1P12107 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.74■■□□□ 1.07
COL11A1P12107 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.74■■□□□ 1.07
COL11A1P12107 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.74■■□□□ 1.07
COL11A1P12107 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL11A1P12107 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL11A1P12107 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL11A1P12107 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.73■■□□□ 1.07
COL11A1P12107 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.73■■□□□ 1.07
COL11A1P12107 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.73■■□□□ 1.07
COL11A1P12107 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.73■■□□□ 1.07
COL11A1P12107 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.73■■□□□ 1.07
COL11A1P12107 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.73■■□□□ 1.07
COL11A1P12107 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL11A1P12107 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL11A1P12107 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.73■■□□□ 1.07
COL11A1P12107 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COL11A1P12107 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.72■■□□□ 1.07
COL11A1P12107 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.72■■□□□ 1.07
COL11A1P12107 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.72■■□□□ 1.07
COL11A1P12107 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
COL11A1P12107 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.72■■□□□ 1.07
COL11A1P12107 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.72■■□□□ 1.07
COL11A1P12107 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms