Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.06■□□□□ 0.96
TPM1P09493 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.06■□□□□ 0.96
TPM1P09493 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
TPM1P09493 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.06■□□□□ 0.96
TPM1P09493 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TPM1P09493 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.05■□□□□ 0.96
TPM1P09493 Z98044.1-201ENST00000632503 1764 ntBASIC21.05■□□□□ 0.96
TPM1P09493 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TPM1P09493 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.05■□□□□ 0.96
TPM1P09493 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TPM1P09493 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.05■□□□□ 0.96
TPM1P09493 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.05■□□□□ 0.96
TPM1P09493 AC006015.1-201ENST00000429970 570 ntBASIC21.05■□□□□ 0.96
TPM1P09493 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.05■□□□□ 0.96
TPM1P09493 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TPM1P09493 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.04■□□□□ 0.96
TPM1P09493 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 IRX1P1-201ENST00000438849 1838 ntBASIC21.04■□□□□ 0.96
TPM1P09493 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TPM1P09493 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.04■□□□□ 0.96
TPM1P09493 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.04■□□□□ 0.96
TPM1P09493 AC087623.3-201ENST00000607047 1098 ntBASIC21.04■□□□□ 0.96
TPM1P09493 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.04■□□□□ 0.96
TPM1P09493 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TPM1P09493 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TPM1P09493 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.04■□□□□ 0.96
TPM1P09493 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.04■□□□□ 0.96
TPM1P09493 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.03■□□□□ 0.96
TPM1P09493 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
TPM1P09493 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 AC104581.1-202ENST00000635932 2618 ntBASIC21.03■□□□□ 0.96
TPM1P09493 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.03■□□□□ 0.96
TPM1P09493 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.03■□□□□ 0.96
TPM1P09493 AC093787.1-201ENST00000450396 207 ntBASIC21.03■□□□□ 0.96
TPM1P09493 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.03■□□□□ 0.96
TPM1P09493 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.03■□□□□ 0.96
TPM1P09493 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.03■□□□□ 0.96
TPM1P09493 AC090164.3-201ENST00000610780 2143 ntBASIC21.03■□□□□ 0.96
TPM1P09493 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
TPM1P09493 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.03■□□□□ 0.96
TPM1P09493 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.03■□□□□ 0.96
TPM1P09493 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TPM1P09493 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TPM1P09493 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 AL031598.1-201ENST00000561511 1773 ntBASIC21.02■□□□□ 0.96
TPM1P09493 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.02■□□□□ 0.96
TPM1P09493 AC093525.10-201ENST00000625130 1569 ntBASIC21.02■□□□□ 0.96
TPM1P09493 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.02■□□□□ 0.96
TPM1P09493 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.02■□□□□ 0.96
TPM1P09493 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.02■□□□□ 0.96
TPM1P09493 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC21.02■□□□□ 0.96
TPM1P09493 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.02■□□□□ 0.96
TPM1P09493 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TPM1P09493 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TPM1P09493 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
TPM1P09493 WIZP1-201ENST00000531444 2299 ntBASIC21.02■□□□□ 0.95
TPM1P09493 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TPM1P09493 AC009113.1-201ENST00000570267 2443 ntBASIC21.02■□□□□ 0.95
TPM1P09493 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TPM1P09493 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.01■□□□□ 0.95
TPM1P09493 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.01■□□□□ 0.95
TPM1P09493 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TPM1P09493 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TPM1P09493 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.01■□□□□ 0.95
TPM1P09493 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms