Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RB1P06400 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.23■□□□□ 0.83
RB1P06400 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.23■□□□□ 0.83
RB1P06400 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 AC104417.2-201ENST00000562989 1793 ntBASIC20.23■□□□□ 0.83
RB1P06400 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
RB1P06400 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RB1P06400 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.22■□□□□ 0.83
RB1P06400 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.22■□□□□ 0.83
RB1P06400 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.22■□□□□ 0.83
RB1P06400 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 TSPY19P-201ENST00000418461 509 ntBASIC20.22■□□□□ 0.83
RB1P06400 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RB1P06400 TSPY18P-201ENST00000441642 509 ntBASIC20.22■□□□□ 0.83
RB1P06400 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.22■□□□□ 0.83
RB1P06400 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.22■□□□□ 0.83
RB1P06400 IFNL4P1-201ENST00000607083 540 ntBASIC20.22■□□□□ 0.83
RB1P06400 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.22■□□□□ 0.83
RB1P06400 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RB1P06400 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RB1P06400 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
RB1P06400 MIR662-201ENST00000384847 95 ntBASIC20.21■□□□□ 0.83
RB1P06400 AL023284.2-201ENST00000405850 579 ntBASIC20.21■□□□□ 0.83
RB1P06400 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.21■□□□□ 0.83
RB1P06400 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.21■□□□□ 0.83
RB1P06400 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.21■□□□□ 0.83
RB1P06400 MIR3180-5-201ENST00000583743 153 ntBASIC20.21■□□□□ 0.83
RB1P06400 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 AL121772.3-201ENST00000610840 674 ntBASIC20.21■□□□□ 0.83
RB1P06400 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.21■□□□□ 0.83
RB1P06400 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 AC007375.3-201ENST00000600936 2314 ntBASIC20.21■□□□□ 0.83
RB1P06400 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RB1P06400 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RB1P06400 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RB1P06400 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 AP000347.1-202ENST00000435868 847 ntBASIC20.2■□□□□ 0.82
RB1P06400 SEC1P-202ENST00000473944 940 ntBASIC20.2■□□□□ 0.82
RB1P06400 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.2■□□□□ 0.82
RB1P06400 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.2■□□□□ 0.82
RB1P06400 AL691432.2-201ENST00000607222 2038 ntBASIC20.2■□□□□ 0.82
RB1P06400 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RB1P06400 KRT18P1-202ENST00000452408 1331 ntBASIC20.2■□□□□ 0.82
RB1P06400 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.2■□□□□ 0.82
RB1P06400 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RB1P06400 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RB1P06400 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RB1P06400 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RB1P06400 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RB1P06400 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 DRAXINP1-201ENST00000437611 948 ntBASIC20.19■□□□□ 0.82
RB1P06400 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RB1P06400 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.19■□□□□ 0.82
RB1P06400 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms