Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
SDCBPO00560 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.26■□□□□ 0.19
SDCBPO00560 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.26■□□□□ 0.19
SDCBPO00560 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.26■□□□□ 0.19
SDCBPO00560 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 WIZP1-201ENST00000531444 2299 ntBASIC16.25■□□□□ 0.19
SDCBPO00560 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 AC090192.1-201ENST00000517740 490 ntBASIC16.25■□□□□ 0.19
SDCBPO00560 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.25■□□□□ 0.19
SDCBPO00560 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 AC006557.6-201ENST00000623071 864 ntBASIC16.25■□□□□ 0.19
SDCBPO00560 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SDCBPO00560 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 AC092368.3-202ENST00000574180 1591 ntBASIC16.25■□□□□ 0.19
SDCBPO00560 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SDCBPO00560 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.25■□□□□ 0.19
SDCBPO00560 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDCBPO00560 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 AL390961.4-201ENST00000623958 2535 ntBASIC16.24■□□□□ 0.19
SDCBPO00560 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.24■□□□□ 0.19
SDCBPO00560 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SDCBPO00560 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 AC073210.2-201ENST00000430369 194 ntBASIC16.24■□□□□ 0.19
SDCBPO00560 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.24■□□□□ 0.19
SDCBPO00560 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.24■□□□□ 0.19
SDCBPO00560 AL138781.1-201ENST00000566567 1274 ntBASIC16.24■□□□□ 0.19
SDCBPO00560 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.24■□□□□ 0.19
SDCBPO00560 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.24■□□□□ 0.19
SDCBPO00560 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.24■□□□□ 0.19
SDCBPO00560 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SDCBPO00560 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.24■□□□□ 0.19
SDCBPO00560 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDCBPO00560 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms