Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 AC079602.3-201ENST00000623931 403 ntBASIC14.85□□□□□ -0.03
COL6A5A8TX70 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 GPAT2P1-201ENST00000444924 1672 ntBASIC14.85□□□□□ -0.03
COL6A5A8TX70 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 KRT18P3-201ENST00000451602 1288 ntBASIC14.85□□□□□ -0.03
COL6A5A8TX70 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 AC116407.3-201ENST00000623905 1129 ntBASIC14.85□□□□□ -0.03
COL6A5A8TX70 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL6A5A8TX70 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A5A8TX70 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 BNIP3P18-201ENST00000593976 575 ntBASIC14.84□□□□□ -0.03
COL6A5A8TX70 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.84□□□□□ -0.03
COL6A5A8TX70 FAM215A-202ENST00000632077 792 ntBASIC14.84□□□□□ -0.03
COL6A5A8TX70 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A5A8TX70 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.83□□□□□ -0.03
COL6A5A8TX70 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A5A8TX70 CNN2P11-201ENST00000429351 262 ntBASIC14.83□□□□□ -0.03
COL6A5A8TX70 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A5A8TX70 AC091607.1-201ENST00000490318 1060 ntBASIC14.83□□□□□ -0.03
COL6A5A8TX70 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL6A5A8TX70 AC034105.1-201ENST00000563488 319 ntBASIC14.83□□□□□ -0.03
COL6A5A8TX70 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.83□□□□□ -0.03
COL6A5A8TX70 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 MIR3917-201ENST00000580971 93 ntBASIC14.83□□□□□ -0.04
COL6A5A8TX70 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC14.83□□□□□ -0.04
COL6A5A8TX70 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL6A5A8TX70 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 AL645939.2-201ENST00000427340 991 ntBASIC14.82□□□□□ -0.04
COL6A5A8TX70 VENTXP7-201ENST00000475503 772 ntBASIC14.82□□□□□ -0.04
COL6A5A8TX70 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 AL591684.3-201ENST00000605187 298 ntBASIC14.82□□□□□ -0.04
COL6A5A8TX70 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 MIR770-201ENST00000390219 98 ntBASIC14.82□□□□□ -0.04
COL6A5A8TX70 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms