Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TRAV3A0A0B4J244 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 AC104771.1-201ENST00000603335 964 ntBASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
TRAV3A0A0B4J244 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 AL512353.2-201ENST00000448759 1962 ntBASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 FEM1AP3-201ENST00000403722 1741 ntBASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 UNC93B4-201ENST00000505679 747 ntBASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 AC092666.2-201ENST00000613287 246 ntBASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV3A0A0B4J244 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms