Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DUX4L12-201ENST00000614593 1267 ntBASIC24.97■■□□□ 1.59
VRK3Q8IV63 DUX4L14-201ENST00000621227 1267 ntBASIC24.97■■□□□ 1.59
VRK3Q8IV63 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
VRK3Q8IV63 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.96■■□□□ 1.59
VRK3Q8IV63 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.96■■□□□ 1.59
VRK3Q8IV63 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
VRK3Q8IV63 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
VRK3Q8IV63 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
VRK3Q8IV63 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.59
VRK3Q8IV63 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
VRK3Q8IV63 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
VRK3Q8IV63 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.95■■□□□ 1.58
VRK3Q8IV63 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.94■■□□□ 1.58
VRK3Q8IV63 AC142086.6-201ENST00000621154 1765 ntBASIC24.94■■□□□ 1.58
VRK3Q8IV63 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.94■■□□□ 1.58
VRK3Q8IV63 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
VRK3Q8IV63 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VRK3Q8IV63 AC110285.7-201ENST00000624417 1536 ntBASIC24.92■■□□□ 1.58
VRK3Q8IV63 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VRK3Q8IV63 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VRK3Q8IV63 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.92■■□□□ 1.58
VRK3Q8IV63 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.92■■□□□ 1.58
VRK3Q8IV63 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
VRK3Q8IV63 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.92■■□□□ 1.58
VRK3Q8IV63 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VRK3Q8IV63 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
VRK3Q8IV63 AP002414.2-202ENST00000590929 1450 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L13-201ENST00000554103 1267 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L15-201ENST00000611059 1267 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 MIR7108-201ENST00000614319 87 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L23-201ENST00000615195 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L24-201ENST00000617576 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L22-201ENST00000618238 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L20-201ENST00000619712 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L21-201ENST00000622058 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L10-201ENST00000622460 1267 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 DUX4L25-201ENST00000624915 1269 ntBASIC24.91■■□□□ 1.58
VRK3Q8IV63 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
VRK3Q8IV63 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.9■■□□□ 1.58
VRK3Q8IV63 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
VRK3Q8IV63 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
VRK3Q8IV63 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
VRK3Q8IV63 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
VRK3Q8IV63 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.89■■□□□ 1.57
VRK3Q8IV63 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.89■■□□□ 1.57
VRK3Q8IV63 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.88■■□□□ 1.57
VRK3Q8IV63 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.88■■□□□ 1.57
VRK3Q8IV63 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
VRK3Q8IV63 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.87■■□□□ 1.57
VRK3Q8IV63 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
VRK3Q8IV63 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
VRK3Q8IV63 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
VRK3Q8IV63 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
VRK3Q8IV63 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
VRK3Q8IV63 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
VRK3Q8IV63 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.86■■□□□ 1.57
VRK3Q8IV63 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.86■■□□□ 1.57
VRK3Q8IV63 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VRK3Q8IV63 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VRK3Q8IV63 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
VRK3Q8IV63 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VRK3Q8IV63 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
VRK3Q8IV63 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.84■■□□□ 1.57
VRK3Q8IV63 CR559946.2-201ENST00000623684 991 ntBASIC24.84■■□□□ 1.57
VRK3Q8IV63 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
VRK3Q8IV63 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
VRK3Q8IV63 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
VRK3Q8IV63 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.83■■□□□ 1.57
VRK3Q8IV63 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
VRK3Q8IV63 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.83■■□□□ 1.57
VRK3Q8IV63 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
VRK3Q8IV63 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.82■■□□□ 1.56
VRK3Q8IV63 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VRK3Q8IV63 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
VRK3Q8IV63 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
VRK3Q8IV63 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VRK3Q8IV63 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VRK3Q8IV63 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VRK3Q8IV63 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
VRK3Q8IV63 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.8■■□□□ 1.56
VRK3Q8IV63 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VRK3Q8IV63 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
VRK3Q8IV63 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.79■■□□□ 1.56
VRK3Q8IV63 MIR3648-2-201ENST00000581792 180 ntBASIC24.79■■□□□ 1.56
VRK3Q8IV63 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.79■■□□□ 1.56
VRK3Q8IV63 MIR3648-1-201ENST00000615959 180 ntBASIC24.79■■□□□ 1.56
VRK3Q8IV63 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.79■■□□□ 1.56
VRK3Q8IV63 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.78■■□□□ 1.56
VRK3Q8IV63 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.78■■□□□ 1.56
VRK3Q8IV63 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
VRK3Q8IV63 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
VRK3Q8IV63 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VRK3Q8IV63 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.77■■□□□ 1.56
VRK3Q8IV63 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
VRK3Q8IV63 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms