Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.32■□□□□ 0.84
CX3CL1P78423 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.32■□□□□ 0.84
CX3CL1P78423 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CX3CL1P78423 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.32■□□□□ 0.84
CX3CL1P78423 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CX3CL1P78423 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CX3CL1P78423 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CX3CL1P78423 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CX3CL1P78423 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CX3CL1P78423 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CX3CL1P78423 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.31■□□□□ 0.84
CX3CL1P78423 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CX3CL1P78423 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.31■□□□□ 0.84
CX3CL1P78423 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.31■□□□□ 0.84
CX3CL1P78423 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CX3CL1P78423 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.31■□□□□ 0.84
CX3CL1P78423 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CX3CL1P78423 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CX3CL1P78423 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CX3CL1P78423 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.3■□□□□ 0.84
CX3CL1P78423 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 DRD5P2-201ENST00000421395 2012 ntBASIC20.29■□□□□ 0.84
CX3CL1P78423 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.29■□□□□ 0.84
CX3CL1P78423 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CX3CL1P78423 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CX3CL1P78423 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CX3CL1P78423 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CX3CL1P78423 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CX3CL1P78423 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.28■□□□□ 0.84
CX3CL1P78423 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CX3CL1P78423 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.27■□□□□ 0.84
CX3CL1P78423 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CX3CL1P78423 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CX3CL1P78423 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CX3CL1P78423 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.26■□□□□ 0.83
CX3CL1P78423 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CX3CL1P78423 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CX3CL1P78423 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CX3CL1P78423 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CX3CL1P78423 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.23■□□□□ 0.83
CX3CL1P78423 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CX3CL1P78423 ZNRF2P2-203ENST00000454624 420 ntBASIC20.23■□□□□ 0.83
CX3CL1P78423 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CX3CL1P78423 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CX3CL1P78423 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CX3CL1P78423 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CX3CL1P78423 ABHD17AP4-201ENST00000411545 909 ntBASIC20.22■□□□□ 0.83
CX3CL1P78423 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.22■□□□□ 0.83
CX3CL1P78423 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CX3CL1P78423 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CX3CL1P78423 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CX3CL1P78423 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.21■□□□□ 0.83
CX3CL1P78423 AC135731.1-201ENST00000569415 2548 ntBASIC20.21■□□□□ 0.83
CX3CL1P78423 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CX3CL1P78423 LINC01971-201ENST00000617888 1048 ntBASIC20.2■□□□□ 0.82
CX3CL1P78423 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CX3CL1P78423 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CX3CL1P78423 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CX3CL1P78423 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CX3CL1P78423 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.19■□□□□ 0.82
CX3CL1P78423 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.19■□□□□ 0.82
CX3CL1P78423 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.19■□□□□ 0.82
CX3CL1P78423 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CX3CL1P78423 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CX3CL1P78423 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CX3CL1P78423 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CX3CL1P78423 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CX3CL1P78423 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CX3CL1P78423 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CX3CL1P78423 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.17■□□□□ 0.82
CX3CL1P78423 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CX3CL1P78423 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CX3CL1P78423 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.16■□□□□ 0.82
CX3CL1P78423 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.16■□□□□ 0.82
CX3CL1P78423 AP002414.2-202ENST00000590929 1450 ntBASIC20.16■□□□□ 0.82
CX3CL1P78423 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CX3CL1P78423 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CX3CL1P78423 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CX3CL1P78423 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.15■□□□□ 0.82
CX3CL1P78423 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.15■□□□□ 0.82
CX3CL1P78423 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CX3CL1P78423 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CX3CL1P78423 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.15■□□□□ 0.82
CX3CL1P78423 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CX3CL1P78423 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CX3CL1P78423 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CX3CL1P78423 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CX3CL1P78423 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CX3CL1P78423 AC110285.7-201ENST00000624417 1536 ntBASIC20.13■□□□□ 0.81
CX3CL1P78423 DUX4L11-201ENST00000611504 1267 ntBASIC20.13■□□□□ 0.81
CX3CL1P78423 DUX4L12-201ENST00000614593 1267 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms