Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AP004833.2-201ENST00000532228 1454 ntBASIC30.15■■■□□ 2.42
SHMT1P34896 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SHMT1P34896 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.15■■■□□ 2.42
SHMT1P34896 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
SHMT1P34896 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.14■■■□□ 2.42
SHMT1P34896 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHMT1P34896 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHMT1P34896 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC30.14■■■□□ 2.41
SHMT1P34896 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.13■■■□□ 2.41
SHMT1P34896 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHMT1P34896 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHMT1P34896 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
SHMT1P34896 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SHMT1P34896 AC148477.6-201ENST00000623746 465 ntBASIC30.12■■■□□ 2.41
SHMT1P34896 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
SHMT1P34896 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SHMT1P34896 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.11■■■□□ 2.41
SHMT1P34896 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHMT1P34896 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.1■■■□□ 2.41
SHMT1P34896 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.1■■■□□ 2.41
SHMT1P34896 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHMT1P34896 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHMT1P34896 RARRES2P2-201ENST00000394842 485 ntBASIC30.09■■■□□ 2.41
SHMT1P34896 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
SHMT1P34896 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.09■■■□□ 2.41
SHMT1P34896 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHMT1P34896 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHMT1P34896 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.08■■■□□ 2.41
SHMT1P34896 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.08■■■□□ 2.41
SHMT1P34896 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHMT1P34896 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
SHMT1P34896 AC100797.4-201ENST00000631653 1827 ntBASIC30.07■■■□□ 2.4
SHMT1P34896 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHMT1P34896 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.06■■■□□ 2.4
SHMT1P34896 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.06■■■□□ 2.4
SHMT1P34896 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.05■■■□□ 2.4
SHMT1P34896 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.05■■■□□ 2.4
SHMT1P34896 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SHMT1P34896 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
SHMT1P34896 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHMT1P34896 RNF126P1-201ENST00000567452 1320 ntBASIC30.04■■■□□ 2.4
SHMT1P34896 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
SHMT1P34896 AC022413.1-201ENST00000624602 984 ntBASIC30.04■■■□□ 2.4
SHMT1P34896 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHMT1P34896 MIR219A2-201ENST00000608502 1504 ntBASIC30.03■■■□□ 2.4
SHMT1P34896 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.03■■■□□ 2.4
SHMT1P34896 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHMT1P34896 AL139393.2-201ENST00000608721 2025 ntBASIC30.02■■■□□ 2.4
SHMT1P34896 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHMT1P34896 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.01■■■□□ 2.39
SHMT1P34896 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.01■■■□□ 2.39
SHMT1P34896 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.01■■■□□ 2.39
SHMT1P34896 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
SHMT1P34896 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
SHMT1P34896 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30■■■□□ 2.39
SHMT1P34896 ST7-202ENST00000323984 2142 ntTSL 5 BASIC29.99■■■□□ 2.39
SHMT1P34896 ST7-207ENST00000393449 2127 ntTSL 5 BASIC29.99■■■□□ 2.39
SHMT1P34896 ABCB10P1-201ENST00000614297 2181 ntBASIC29.99■■■□□ 2.39
SHMT1P34896 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.98■■■□□ 2.39
SHMT1P34896 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.98■■■□□ 2.39
SHMT1P34896 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.97■■■□□ 2.39
SHMT1P34896 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SHMT1P34896 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SHMT1P34896 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
SHMT1P34896 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.96■■■□□ 2.39
SHMT1P34896 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.96■■■□□ 2.39
SHMT1P34896 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
SHMT1P34896 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SHMT1P34896 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.95■■■□□ 2.39
SHMT1P34896 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
SHMT1P34896 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
SHMT1P34896 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
SHMT1P34896 AC060814.1-201ENST00000554326 538 ntBASIC29.94■■■□□ 2.38
SHMT1P34896 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SHMT1P34896 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SHMT1P34896 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SHMT1P34896 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.92■■■□□ 2.38
SHMT1P34896 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.92■■■□□ 2.38
SHMT1P34896 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
SHMT1P34896 ABHD17AP5-201ENST00000580133 923 ntBASIC29.91■■■□□ 2.38
SHMT1P34896 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC29.91■■■□□ 2.38
SHMT1P34896 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
SHMT1P34896 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SHMT1P34896 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
SHMT1P34896 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SHMT1P34896 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
SHMT1P34896 ABCB10P3-201ENST00000561950 2166 ntBASIC29.89■■■□□ 2.38
SHMT1P34896 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
SHMT1P34896 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.88■■■□□ 2.37
SHMT1P34896 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SHMT1P34896 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC29.87■■■□□ 2.37
SHMT1P34896 MED25-210ENST00000612854 801 ntTSL 5 BASIC29.87■■■□□ 2.37
SHMT1P34896 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
SHMT1P34896 MED25-214ENST00000622402 642 ntTSL 5 BASIC29.87■■■□□ 2.37
SHMT1P34896 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.87■■■□□ 2.37
SHMT1P34896 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
SHMT1P34896 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
SHMT1P34896 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SHMT1P34896 HES4-202ENST00000428771 1040 ntTSL 2 BASIC29.85■■■□□ 2.37
SHMT1P34896 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms