Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 SNP1YIL061C 903 nt8.32□□□□□ -1.08
SHP1P34223 YOR111WYOR111W 699 nt8.32□□□□□ -1.08
SHP1P34223 YPL067CYPL067C 597 nt8.32□□□□□ -1.08
SHP1P34223 PSD1YNL169C 1503 nt8.31□□□□□ -1.08
SHP1P34223 STS1YIR011C 960 nt8.31□□□□□ -1.08
SHP1P34223 MCP1YOR228C 909 nt8.31□□□□□ -1.08
SHP1P34223 NDE2YDL085W 1638 nt8.3□□□□□ -1.08
SHP1P34223 HXT11YOL156W 1704 nt8.3□□□□□ -1.08
SHP1P34223 TDA4YJR116W 840 nt8.3□□□□□ -1.08
SHP1P34223 ZIM17YNL310C 525 nt8.3□□□□□ -1.08
SHP1P34223 NME1NME1 340 nt8.3□□□□□ -1.08
SHP1P34223 CDC3YLR314C 1563 nt8.3□□□□□ -1.08
SHP1P34223 PSA1YDL055C 1086 nt8.29□□□□□ -1.08
SHP1P34223 GLY1YEL046C 1164 nt8.29□□□□□ -1.08
SHP1P34223 HRB1YNL004W 1365 nt8.29□□□□□ -1.08
SHP1P34223 MAS2YHR024C 1449 nt8.29□□□□□ -1.08
SHP1P34223 GTB1YDR221W 2109 nt8.28□□□□□ -1.08
SHP1P34223 YGL081WYGL081W 963 nt8.28□□□□□ -1.08
SHP1P34223 CST26YBR042C 1194 nt8.28□□□□□ -1.08
SHP1P34223 SPS1YDR523C 1473 nt8.27□□□□□ -1.09
SHP1P34223 MRN1YPL184C 1839 nt8.27□□□□□ -1.09
SHP1P34223 YGR137WYGR137W 375 nt8.27□□□□□ -1.09
SHP1P34223 MNN9YPL050C 1188 nt8.27□□□□□ -1.09
SHP1P34223 LEA1YPL213W 717 nt8.27□□□□□ -1.09
SHP1P34223 TGL5YOR081C 2250 nt8.27□□□□□ -1.09
SHP1P34223 YML034C-AYML034C-A 399 nt8.26□□□□□ -1.09
SHP1P34223 INP54YOL065C 1155 nt8.25□□□□□ -1.09
SHP1P34223 SRM1YGL097W 1449 nt8.25□□□□□ -1.09
SHP1P34223 DTR1YBR180W 1719 nt8.25□□□□□ -1.09
SHP1P34223 GAL2YLR081W 1725 nt8.24□□□□□ -1.09
SHP1P34223 AIM46YHR199C 933 nt8.24□□□□□ -1.09
SHP1P34223 MRP7YNL005C 1116 nt8.24□□□□□ -1.09
SHP1P34223 SRY1YKL218C 981 nt8.23□□□□□ -1.09
SHP1P34223 CYT1YOR065W 930 nt8.23□□□□□ -1.09
SHP1P34223 OSM1YJR051W 1506 nt8.21□□□□□ -1.1
SHP1P34223 TRR2YHR106W 1029 nt8.21□□□□□ -1.1
SHP1P34223 ELP6YMR312W 822 nt8.21□□□□□ -1.1
SHP1P34223 YRF1-2YER190W 5046 nt8.21□□□□□ -1.1
SHP1P34223 LGE1YPL055C 999 nt8.2□□□□□ -1.1
SHP1P34223 SPE3YPR069C 882 nt8.2□□□□□ -1.1
SHP1P34223 MTC6YHR151C 1581 nt8.19□□□□□ -1.1
SHP1P34223 PDA1YER178W 1263 nt8.19□□□□□ -1.1
SHP1P34223 INM1YHR046C 888 nt8.19□□□□□ -1.1
SHP1P34223 PRY2YKR013W 990 nt8.19□□□□□ -1.1
SHP1P34223 PRS4YBL068W 981 nt8.19□□□□□ -1.1
SHP1P34223 AAD14YNL331C 1131 nt8.19□□□□□ -1.1
SHP1P34223 MPH3YJR160C 1809 nt8.18□□□□□ -1.1
SHP1P34223 NBA1YOL070C 1506 nt8.18□□□□□ -1.1
SHP1P34223 PPZ2YDR436W 2133 nt8.17□□□□□ -1.1
SHP1P34223 PIL1YGR086C 1020 nt8.17□□□□□ -1.1
SHP1P34223 AOS1YPR180W 1044 nt8.17□□□□□ -1.1
SHP1P34223 TIF3YPR163C 1311 nt8.17□□□□□ -1.1
SHP1P34223 YER152CYER152C 1332 nt8.15□□□□□ -1.1
SHP1P34223 SKP1YDR328C 585 nt8.15□□□□□ -1.1
SHP1P34223 HAM1YJR069C 594 nt8.15□□□□□ -1.1
SHP1P34223 YNL140CYNL140C 570 nt8.15□□□□□ -1.1
SHP1P34223 BIO3YNR058W 1443 nt8.14□□□□□ -1.11
SHP1P34223 PLB3YOL011W 2061 nt8.14□□□□□ -1.11
SHP1P34223 DSC3YOR223W 879 nt8.14□□□□□ -1.11
SHP1P34223 snR30snR30 606 nt8.14□□□□□ -1.11
SHP1P34223 YPT10YBR264C 600 nt8.14□□□□□ -1.11
SHP1P34223 DCR2YLR361C 1737 nt8.14□□□□□ -1.11
SHP1P34223 NAF1YNL124W 1479 nt8.13□□□□□ -1.11
SHP1P34223 BSP1YPR171W 1731 nt8.13□□□□□ -1.11
SHP1P34223 YHL008CYHL008C 1884 nt8.13□□□□□ -1.11
SHP1P34223 PMP3YDR276C 168 nt8.11□□□□□ -1.11
SHP1P34223 GET2YER083C 858 nt8.11□□□□□ -1.11
SHP1P34223 YML122CYML122C 381 nt8.11□□□□□ -1.11
SHP1P34223 HXK1YFR053C 1458 nt8.11□□□□□ -1.11
SHP1P34223 YRF1-3YGR296W 5580 nt8.11□□□□□ -1.11
SHP1P34223 YRF1-6YNL339C 5580 nt8.11□□□□□ -1.11
SHP1P34223 YRF1-7YPL283C 5580 nt8.11□□□□□ -1.11
SHP1P34223 TPO1YLL028W 1761 nt8.1□□□□□ -1.11
SHP1P34223 SML1YML058W 315 nt8.1□□□□□ -1.11
SHP1P34223 FTH1YBR207W 1398 nt8.1□□□□□ -1.11
SHP1P34223 BDS1YOL164W 1941 nt8.09□□□□□ -1.11
SHP1P34223 YHR033WYHR033W 1272 nt8.09□□□□□ -1.11
SHP1P34223 FIT1YDR534C 1587 nt8.09□□□□□ -1.11
SHP1P34223 TOK1YJL093C 2076 nt8.09□□□□□ -1.11
SHP1P34223 KTR4YBR199W 1395 nt8.09□□□□□ -1.12
SHP1P34223 RFC1YOR217W 2586 nt8.09□□□□□ -1.12
SHP1P34223 DAL80YKR034W 810 nt8.08□□□□□ -1.12
SHP1P34223 LDB7YBL006C 543 nt8.08□□□□□ -1.12
SHP1P34223 ERV25YML012W 636 nt8.08□□□□□ -1.12
SHP1P34223 NFS1YCL017C 1494 nt8.07□□□□□ -1.12
SHP1P34223 SPG1YGR236C 288 nt8.07□□□□□ -1.12
SHP1P34223 CDA1YLR307W 906 nt8.07□□□□□ -1.12
SHP1P34223 YPC1YBR183W 951 nt8.07□□□□□ -1.12
SHP1P34223 YDR215CYDR215C 414 nt8.06□□□□□ -1.12
SHP1P34223 ERG10YPL028W 1197 nt8.06□□□□□ -1.12
SHP1P34223 ALD5YER073W 1563 nt8.05□□□□□ -1.12
SHP1P34223 POR2YIL114C 846 nt8.05□□□□□ -1.12
SHP1P34223 PEX28YHR150W 1740 nt8.05□□□□□ -1.12
SHP1P34223 OPI1YHL020C 1215 nt8.04□□□□□ -1.12
SHP1P34223 DPM1YPR183W 804 nt8.04□□□□□ -1.12
SHP1P34223 DML1YMR211W 1428 nt8.03□□□□□ -1.12
SHP1P34223 YLR162WYLR162W 357 nt8.03□□□□□ -1.12
SHP1P34223 PMT1YDL095W 2454 nt8.03□□□□□ -1.12
SHP1P34223 VPS65YLR322W 315 nt8.01□□□□□ -1.13
SHP1P34223 GAL83YER027C 1254 nt8□□□□□ -1.13
Retrieved 100 of 7,029 protein–RNA pairs in 145.7 ms