Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL4A5P29400 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.35■■■□□ 2.61
COL4A5P29400 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.35■■■□□ 2.61
COL4A5P29400 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.34■■■□□ 2.61
COL4A5P29400 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL4A5P29400 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL4A5P29400 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL4A5P29400 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.33■■■□□ 2.61
COL4A5P29400 AL157400.5-201ENST00000507624 621 ntBASIC31.32■■■□□ 2.6
COL4A5P29400 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.32■■■□□ 2.6
COL4A5P29400 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL4A5P29400 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL4A5P29400 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.31■■■□□ 2.6
COL4A5P29400 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL4A5P29400 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.31■■■□□ 2.6
COL4A5P29400 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
COL4A5P29400 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
COL4A5P29400 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.29■■■□□ 2.6
COL4A5P29400 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL4A5P29400 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.29■■■□□ 2.6
COL4A5P29400 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL4A5P29400 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL4A5P29400 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.27■■■□□ 2.6
COL4A5P29400 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
COL4A5P29400 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL4A5P29400 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
COL4A5P29400 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A5P29400 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A5P29400 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A5P29400 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A5P29400 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL4A5P29400 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL4A5P29400 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.25■■■□□ 2.59
COL4A5P29400 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
COL4A5P29400 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A5P29400 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A5P29400 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL4A5P29400 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
COL4A5P29400 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.21■■■□□ 2.59
COL4A5P29400 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A5P29400 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A5P29400 ECEL1P2-201ENST00000461596 1295 ntBASIC31.21■■■□□ 2.59
COL4A5P29400 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A5P29400 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL4A5P29400 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL4A5P29400 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL4A5P29400 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
COL4A5P29400 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL4A5P29400 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL4A5P29400 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL4A5P29400 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL4A5P29400 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.18■■■□□ 2.58
COL4A5P29400 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL4A5P29400 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A5P29400 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.16■■■□□ 2.58
COL4A5P29400 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL4A5P29400 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL4A5P29400 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.15■■■□□ 2.58
COL4A5P29400 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
COL4A5P29400 AL135925.1-201ENST00000605920 1701 ntBASIC31.14■■■□□ 2.58
COL4A5P29400 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A5P29400 AC129492.7-201ENST00000622992 756 ntBASIC31.13■■■□□ 2.57
COL4A5P29400 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.13■■■□□ 2.57
COL4A5P29400 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
COL4A5P29400 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A5P29400 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.12■■■□□ 2.57
COL4A5P29400 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.11■■■□□ 2.57
COL4A5P29400 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL4A5P29400 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.11■■■□□ 2.57
COL4A5P29400 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.1■■■□□ 2.57
COL4A5P29400 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL4A5P29400 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
COL4A5P29400 AL451085.2-201ENST00000605085 799 ntBASIC31.09■■■□□ 2.57
COL4A5P29400 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A5P29400 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL4A5P29400 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.08■■■□□ 2.57
COL4A5P29400 AC007029.1-201ENST00000604183 313 ntBASIC31.08■■■□□ 2.57
COL4A5P29400 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL4A5P29400 AL592293.1-201ENST00000502889 1188 ntBASIC31.07■■■□□ 2.56
COL4A5P29400 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL4A5P29400 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.06■■■□□ 2.56
COL4A5P29400 AC009831.1-201ENST00000580420 1582 ntBASIC31.06■■■□□ 2.56
COL4A5P29400 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
COL4A5P29400 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL4A5P29400 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL4A5P29400 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.05■■■□□ 2.56
COL4A5P29400 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL4A5P29400 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A5P29400 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.03■■■□□ 2.56
COL4A5P29400 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL4A5P29400 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL4A5P29400 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL4A5P29400 AL035685.1-201ENST00000636663 812 ntBASIC31.02■■■□□ 2.56
COL4A5P29400 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL4A5P29400 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms