Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA3O43365 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA3O43365 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA3O43365 AL137003.2-201ENST00000606924 2538 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA3O43365 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA3O43365 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA3O43365 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-254P-201ENST00000363377 107 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 Y_RNA.202-201ENST00000364083 110 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-738P-201ENST00000384531 106 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-1127P-201ENST00000384580 107 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNY4P36-201ENST00000391116 96 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-1304P-201ENST00000411374 106 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RPL37P10-201ENST00000412884 288 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC245028.1-201ENST00000423259 256 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA3O43365 CKS1BP5-201ENST00000434172 273 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 AC005019.1-201ENST00000436455 431 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC004866.2-201ENST00000438285 481 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 PTMAP3-201ENST00000447474 330 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RPL29P29-201ENST00000448725 423 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 FABP5P13-201ENST00000452144 328 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 snoU13.3-201ENST00000459441 104 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 Y_RNA.631-201ENST00000459607 101 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA3O43365 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA3O43365 AC008897.1-201ENST00000494006 347 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 TRBVA-201ENST00000498804 316 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 HMGB3P15-201ENST00000507326 574 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RN7SKP24-201ENST00000515888 284 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-390P-201ENST00000516259 103 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNU6-256P-201ENST00000516747 97 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 RNA5SP454-201ENST00000517231 127 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 HMGB1P19-201ENST00000517578 577 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA3O43365 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA3O43365 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA3O43365 AC093012.1-202ENST00000549403 582 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC012182.1-201ENST00000570133 895 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA3O43365 SNRPGP17-201ENST00000603780 214 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AL670379.10-201ENST00000604330 253 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AL670379.9-201ENST00000605428 253 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AL080274.1-201ENST00000605565 220 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC116312.1-201ENST00000606841 314 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 U73479.1-201ENST00000618062 168 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC103705.1-201ENST00000619013 241 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 AC007998.5-201ENST00000622938 237 ntBASIC4.06□□□□□ -1.76
HOXA3O43365 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA3O43365 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
HOXA3O43365 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA3O43365 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA3O43365 MTCO1P12-201ENST00000414273 1543 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA3O43365 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXA3O43365 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA3O43365 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA3O43365 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA3O43365 RNU6-1155P-201ENST00000363554 107 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 RN7SKP44-201ENST00000363602 316 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 Y_RNA.216-201ENST00000364205 93 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 SNORA23-201ENST00000365128 182 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 Y_RNA.422-201ENST00000384054 114 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 MIR192-201ENST00000384915 110 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXA3O43365 RNU6-712P-201ENST00000410558 100 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 FAR2P2-201ENST00000413041 594 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms