RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 AEBP2Q6ZN18 517 aaPredicted RBP19.96■□□□□ 0.79
HMGB1P19-201ENST00000517578 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
HMGB1P19-201ENST00000517578 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.31
HMGB1P19-201ENST00000517578 PHF23Q9BUL5 403 aaPredicted RBP16.76■□□□□ 0.27
HMGB1P19-201ENST00000517578 FOXD1Q16676 465 aa15.84■□□□□ 0.13
HMGB1P19-201ENST00000517578 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
HMGB1P19-201ENST00000517578 PPP6R1Q9UPN7 881 aa14.85□□□□□ -0.03
HMGB1P19-201ENST00000517578 ADRA2BP18089 450 aa14.78□□□□□ -0.04
HMGB1P19-201ENST00000517578 PIAS4Q8N2W9 510 aaPredicted RBP14.78□□□□□ -0.04
HMGB1P19-201ENST00000517578 MSH5O43196 834 aa14.76□□□□□ -0.05
HMGB1P19-201ENST00000517578 POTEDQ86YR6 584 aa14.41□□□□□ -0.1
HMGB1P19-201ENST00000517578 MAPK8IP2Q13387 824 aaPredicted RBP13.58□□□□□ -0.24
HMGB1P19-201ENST00000517578 DMRT2Q9Y5R5 561 aa13.48□□□□□ -0.25
HMGB1P19-201ENST00000517578 SCAF1Q9H7N4 1312 aaKnown RBP13.46□□□□□ -0.25
HMGB1P19-201ENST00000517578 PPP4R3CPQ6ZMV5 832 aa13.28□□□□□ -0.28
HMGB1P19-201ENST00000517578 CNKSR2Q8WXI2 1034 aa13.01□□□□□ -0.33
HMGB1P19-201ENST00000517578 HOXD11P31277 338 aaPredicted RBP13□□□□□ -0.33
HMGB1P19-201ENST00000517578 RNF216Q9NWF9 866 aaPredicted RBP12.89□□□□□ -0.35
HMGB1P19-201ENST00000517578 DCAF8L1A6NGE4 600 aa12.87□□□□□ -0.35
HMGB1P19-201ENST00000517578 NCBP3Q53F19 620 aaKnown RBP12.72□□□□□ -0.37
HMGB1P19-201ENST00000517578 CACNB1Q02641 598 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P19-201ENST00000517578 RNF39Q9H2S5 420 aa12.63□□□□□ -0.39
HMGB1P19-201ENST00000517578 NPM3O75607 178 aaKnown RBP12.61□□□□□ -0.39
HMGB1P19-201ENST00000517578 DNAJC5BQ9UF47 199 aa12.52□□□□□ -0.41
HMGB1P19-201ENST00000517578 C1QBPQ07021 282 aaKnown RBP12.42□□□□□ -0.42
HMGB1P19-201ENST00000517578 KCNA4P22459 653 aa12.39□□□□□ -0.43
HMGB1P19-201ENST00000517578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.33□□□□□ -0.44
HMGB1P19-201ENST00000517578 U3KPZ7 1027 aaPredicted RBP12.14□□□□□ -0.47
HMGB1P19-201ENST00000517578 SLC4A2P04920 1241 aa12.05□□□□□ -0.48
HMGB1P19-201ENST00000517578 SPINK5Q9NQ38 1064 aaPredicted RBP11.95□□□□□ -0.5
HMGB1P19-201ENST00000517578 CAPN15O75808 1086 aa11.88□□□□□ -0.51
HMGB1P19-201ENST00000517578 DSG3P32926 999 aa11.85□□□□□ -0.51
HMGB1P19-201ENST00000517578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P19-201ENST00000517578 HNRNPUL2Q1KMD3 747 aaKnown RBP11.73□□□□□ -0.53
HMGB1P19-201ENST00000517578 APLP2Q06481 763 aa11.71□□□□□ -0.53
HMGB1P19-201ENST00000517578 TRHP20396 242 aaPredicted RBP11.7□□□□□ -0.54
HMGB1P19-201ENST00000517578 SAMD1Q6SPF0 538 aaPredicted RBP11.68□□□□□ -0.54
HMGB1P19-201ENST00000517578 ZNF219Q9P2Y4 722 aaPredicted RBP11.68□□□□□ -0.54
HMGB1P19-201ENST00000517578 SLC4A1APQ9BWU0 796 aaKnown RBP11.67□□□□□ -0.54
HMGB1P19-201ENST00000517578 ABCB7O75027 752 aa11.64□□□□□ -0.55
HMGB1P19-201ENST00000517578 MYCNP04198 464 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P19-201ENST00000517578 FOXD4L1Q9NU39 408 aa11.53□□□□□ -0.56
HMGB1P19-201ENST00000517578 ZBTB22O15209 634 aa11.43□□□□□ -0.58
HMGB1P19-201ENST00000517578 ATF5Q9Y2D1 282 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P19-201ENST00000517578 POLA2Q14181 598 aa11.41□□□□□ -0.58
HMGB1P19-201ENST00000517578 POTEHQ6S545 545 aa11.28□□□□□ -0.6
HMGB1P19-201ENST00000517578 RBM42Q9BTD8 480 aaKnown RBP11.25□□□□□ -0.61
HMGB1P19-201ENST00000517578 ATXN8OSP0DMR3 200 aa11.17□□□□□ -0.62
HMGB1P19-201ENST00000517578 ZBTB12Q9Y330 459 aaPredicted RBP11.14□□□□□ -0.63
HMGB1P19-201ENST00000517578 OSCARQ8IYS5 282 aa11.06□□□□□ -0.64
HMGB1P19-201ENST00000517578 CHRDL2Q6WN34 429 aa11.02□□□□□ -0.65
HMGB1P19-201ENST00000517578 AKT1S1Q96B36 256 aa11.02□□□□□ -0.65
HMGB1P19-201ENST00000517578 REM2Q8IYK8 340 aaPredicted RBP10.93□□□□□ -0.66
HMGB1P19-201ENST00000517578 CSRNP3Q8WYN3 585 aa10.91□□□□□ -0.66
HMGB1P19-201ENST00000517578 FBLN2P98095 1184 aa10.88□□□□□ -0.67
HMGB1P19-201ENST00000517578 MKRN4PQ13434 485 aaPredicted RBP10.88□□□□□ -0.67
HMGB1P19-201ENST00000517578 PITPNM1O00562 1244 aa10.83□□□□□ -0.68
HMGB1P19-201ENST00000517578 SPDYE2BA6NHP3 402 aa10.82□□□□□ -0.68
HMGB1P19-201ENST00000517578 SPDYE6P0CI01 402 aa10.82□□□□□ -0.68
HMGB1P19-201ENST00000517578 SPDYE2Q495Y8 402 aa10.82□□□□□ -0.68
HMGB1P19-201ENST00000517578 PIP4P2Q8N4L2 257 aa10.78□□□□□ -0.68
HMGB1P19-201ENST00000517578 EHMT2Q96KQ7 1210 aa10.75□□□□□ -0.69
HMGB1P19-201ENST00000517578 FXR2P51116 673 aaKnown RBP eCLIP10.73□□□□□ -0.69
HMGB1P19-201ENST00000517578 SSUH2Q9Y2M2 353 aa10.72□□□□□ -0.69
HMGB1P19-201ENST00000517578 ZNF692Q9BU19 519 aaPredicted RBP10.7□□□□□ -0.7
HMGB1P19-201ENST00000517578 SPDYE1Q8NFV5 336 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P19-201ENST00000517578 CLEC11AQ9Y240 323 aa10.6□□□□□ -0.71
HMGB1P19-201ENST00000517578 SP7Q8TDD2 431 aaPredicted RBP10.59□□□□□ -0.71
HMGB1P19-201ENST00000517578 PABPN1Q86U42 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
HMGB1P19-201ENST00000517578 HAX1O00165 279 aa10.54□□□□□ -0.72
HMGB1P19-201ENST00000517578 PRKAR2AP13861 404 aaKnown RBP10.53□□□□□ -0.72
HMGB1P19-201ENST00000517578 EVX2Q03828 476 aa10.48□□□□□ -0.73
HMGB1P19-201ENST00000517578 CHADLQ6NUI6 762 aa10.44□□□□□ -0.74
HMGB1P19-201ENST00000517578 PRR29P0C7W0 189 aa10.43□□□□□ -0.74
HMGB1P19-201ENST00000517578 C19orf67A6NJJ6 358 aa10.38□□□□□ -0.75
HMGB1P19-201ENST00000517578 SPDYE4A6NLX3 237 aa10.34□□□□□ -0.75
HMGB1P19-201ENST00000517578 FARP1Q9Y4F1 1045 aaPredicted RBP10.26□□□□□ -0.77
HMGB1P19-201ENST00000517578 STAG3Q9UJ98 1225 aa10.23□□□□□ -0.77
HMGB1P19-201ENST00000517578 CREBZFQ9NS37 354 aa10.22□□□□□ -0.77
HMGB1P19-201ENST00000517578 GABBR2O75899 941 aa10.21□□□□□ -0.77
HMGB1P19-201ENST00000517578 CD44P16070 742 aaKnown RBP10.19□□□□□ -0.78
HMGB1P19-201ENST00000517578 PROM2Q8N271 834 aa10.14□□□□□ -0.79
HMGB1P19-201ENST00000517578 MNX1P50219 401 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P19-201ENST00000517578 ZNF579Q8NAF0 562 aaKnown RBP10.05□□□□□ -0.8
HMGB1P19-201ENST00000517578 ZRANB1Q9UGI0 708 aa10.05□□□□□ -0.8
HMGB1P19-201ENST00000517578 POTEIP0CG38 1075 aa10.03□□□□□ -0.8
HMGB1P19-201ENST00000517578 CLCN6P51797 869 aa10.02□□□□□ -0.81
HMGB1P19-201ENST00000517578 NPM1P06748 294 aaKnown RBP eCLIP9.97□□□□□ -0.81
HMGB1P19-201ENST00000517578 GALR2O43603 387 aaPredicted RBP9.94□□□□□ -0.82
HMGB1P19-201ENST00000517578 PAK3O75914 559 aaPredicted RBP9.93□□□□□ -0.82
HMGB1P19-201ENST00000517578 PHF12Q96QT6 1004 aa9.93□□□□□ -0.82
HMGB1P19-201ENST00000517578 LHX8Q68G74 356 aa9.92□□□□□ -0.82
HMGB1P19-201ENST00000517578 DCBLD2Q96PD2 775 aa9.9□□□□□ -0.82
HMGB1P19-201ENST00000517578 FKBP8Q14318 412 aa9.86□□□□□ -0.83
HMGB1P19-201ENST00000517578 MIER1Q8N108 512 aa9.83□□□□□ -0.84
HMGB1P19-201ENST00000517578 TSPYL2Q9H2G4 693 aaPredicted RBP9.82□□□□□ -0.84
HMGB1P19-201ENST00000517578 MS4A3Q96HJ5 214 aa9.81□□□□□ -0.84
HMGB1P19-201ENST00000517578 CCDC61Q9Y6R9 512 aa9.81□□□□□ -0.84
HMGB1P19-201ENST00000517578 PLEKHG5O94827 1062 aa9.79□□□□□ -0.84
HMGB1P19-201ENST00000517578 RASEFQ8IZ41 740 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms