RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 NISCHQ9Y2I1 1504 aa8.38□□□□□ -1.07
PCDH9-201ENST00000377861 MYT1Q01538 1121 aa8.01□□□□□ -1.13
PCDH9-201ENST00000377861 ZEB1P37275 1124 aaPredicted RBP7.97□□□□□ -1.13
PCDH9-201ENST00000377861 PELP1Q8IZL8 1130 aaKnown RBP7.95□□□□□ -1.14
PCDH9-201ENST00000377861 FAM9AQ8IZU1 332 aaPredicted RBP7.62□□□□□ -1.19
PCDH9-201ENST00000377861 DCAF8L2P0C7V8 631 aa7.58□□□□□ -1.2
PCDH9-201ENST00000377861 ACIN1Q9UKV3 1341 aaKnown RBP7.55□□□□□ -1.2
PCDH9-201ENST00000377861 CENPBP07199 599 aaPredicted RBP7.52□□□□□ -1.21
PCDH9-201ENST00000377861 TRIM26Q12899 539 aaPredicted RBP7.51□□□□□ -1.21
PCDH9-201ENST00000377861 APLP2Q06481 763 aa7.5□□□□□ -1.21
PCDH9-201ENST00000377861 SUPT5HO00267 1087 aaKnown RBP7.5□□□□□ -1.21
PCDH9-201ENST00000377861 CCER1Q8TC90 406 aaPredicted RBP7.47□□□□□ -1.21
PCDH9-201ENST00000377861 CLSPNQ9HAW4 1339 aa7.45□□□□□ -1.22
PCDH9-201ENST00000377861 TTBK1Q5TCY1 1321 aaPredicted RBP7.45□□□□□ -1.22
PCDH9-201ENST00000377861 HRCP23327 699 aa7.38□□□□□ -1.23
PCDH9-201ENST00000377861 TRIM41Q8WV44 630 aa7.37□□□□□ -1.23
PCDH9-201ENST00000377861 YTHDC1Q96MU7 727 aaKnown RBP7.32□□□□□ -1.24
PCDH9-201ENST00000377861 CHIC1Q5VXU3 224 aa7.28□□□□□ -1.24
PCDH9-201ENST00000377861 PCGF6Q9BYE7 350 aa7.26□□□□□ -1.25
PCDH9-201ENST00000377861 MYT1LQ9UL68 1186 aa7.25□□□□□ -1.25
PCDH9-201ENST00000377861 TIMELESSQ9UNS1 1208 aa7.2□□□□□ -1.26
PCDH9-201ENST00000377861 DCAF1Q9Y4B6 1507 aa7.16□□□□□ -1.26
PCDH9-201ENST00000377861 SLC24A1O60721 1099 aa7.11□□□□□ -1.27
PCDH9-201ENST00000377861 NEFLP07196 543 aa7.11□□□□□ -1.27
PCDH9-201ENST00000377861 MYO15BQ96JP2 1530 aa7.08□□□□□ -1.28
PCDH9-201ENST00000377861 EEA1Q15075 1411 aa7.08□□□□□ -1.28
PCDH9-201ENST00000377861 UBTFP17480 764 aaKnown RBP7.07□□□□□ -1.28
PCDH9-201ENST00000377861 ERICH6BQ5W0A0 696 aa7.03□□□□□ -1.28
PCDH9-201ENST00000377861 CSRNP3Q8WYN3 585 aa7.02□□□□□ -1.29
PCDH9-201ENST00000377861 SHROOM4Q9ULL8 1493 aa7.02□□□□□ -1.29
PCDH9-201ENST00000377861 EIF5BO60841 1220 aaKnown RBP7□□□□□ -1.29
PCDH9-201ENST00000377861 DIEXFQ68CQ4 756 aaKnown RBP6.98□□□□□ -1.29
PCDH9-201ENST00000377861 NEUROD1Q13562 356 aa6.98□□□□□ -1.29
PCDH9-201ENST00000377861 ZNF316A6NFI3 1004 aaPredicted RBP6.97□□□□□ -1.29
PCDH9-201ENST00000377861 ZCCHC6Q5VYS8 1495 aaKnown RBP6.96□□□□□ -1.29
PCDH9-201ENST00000377861 ANP32EQ9BTT0 268 aa6.94□□□□□ -1.3
PCDH9-201ENST00000377861 CDK11AQ9UQ88 783 aaPredicted RBP6.93□□□□□ -1.3
PCDH9-201ENST00000377861 ARID4BQ4LE39 1312 aaPredicted RBP6.91□□□□□ -1.3
PCDH9-201ENST00000377861 ERICH6Q7L0X2 663 aa6.9□□□□□ -1.3
PCDH9-201ENST00000377861 DAXXQ9UER7 740 aaPredicted RBP6.87□□□□□ -1.31
PCDH9-201ENST00000377861 STAC3Q96MF2 364 aa6.85□□□□□ -1.31
PCDH9-201ENST00000377861 LOC105371045A0A1W2PR82 267 aa6.84□□□□□ -1.32
PCDH9-201ENST00000377861 ANP32CO43423 234 aa6.83□□□□□ -1.32
PCDH9-201ENST00000377861 TNIKQ9UKE5 1360 aa6.83□□□□□ -1.32
PCDH9-201ENST00000377861 NGEFQ8N5V2 710 aa6.82□□□□□ -1.32
PCDH9-201ENST00000377861 CCDC180Q9P1Z9 1646 aa6.81□□□□□ -1.32
PCDH9-201ENST00000377861 SCAF1Q9H7N4 1312 aaKnown RBP6.79□□□□□ -1.32
PCDH9-201ENST00000377861 NACADO15069 1562 aa6.77□□□□□ -1.33
PCDH9-201ENST00000377861 CCER2I3L3R5 266 aa6.76□□□□□ -1.33
PCDH9-201ENST00000377861 RSPH4AQ5TD94 716 aa6.76□□□□□ -1.33
PCDH9-201ENST00000377861 RSF1Q96T23 1441 aaPredicted RBP6.76□□□□□ -1.33
PCDH9-201ENST00000377861 CDCA8Q53HL2 280 aa6.76□□□□□ -1.33
PCDH9-201ENST00000377861 NEFMP07197 916 aa6.74□□□□□ -1.33
PCDH9-201ENST00000377861 CFAP44Q96MT7 982 aa6.74□□□□□ -1.33
PCDH9-201ENST00000377861 AAMPQ13685 434 aa6.74□□□□□ -1.33
PCDH9-201ENST00000377861 IL27Q8NEV9 243 aa6.73□□□□□ -1.33
PCDH9-201ENST00000377861 CHMP4BQ9H444 224 aaKnown RBP6.73□□□□□ -1.33
PCDH9-201ENST00000377861 RTL5Q5HYW3 569 aaPredicted RBP6.71□□□□□ -1.34
PCDH9-201ENST00000377861 CHMP4AQ9BY43 222 aa6.71□□□□□ -1.34
PCDH9-201ENST00000377861 WRNQ14191 1432 aaPredicted RBP eCLIP6.71□□□□□ -1.34
PCDH9-201ENST00000377861 USP35Q9P2H5 1018 aa6.7□□□□□ -1.34
PCDH9-201ENST00000377861 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.7□□□□□ -1.34
PCDH9-201ENST00000377861 GTF3C3Q9Y5Q9 886 aa6.68□□□□□ -1.34
PCDH9-201ENST00000377861 GLIPR1L2Q4G1C9 344 aa6.67□□□□□ -1.34
PCDH9-201ENST00000377861 ANP32AP39687 249 aaKnown RBP6.66□□□□□ -1.34
PCDH9-201ENST00000377861 HAP1P54257 671 aaPredicted RBP6.66□□□□□ -1.34
PCDH9-201ENST00000377861 MS4A1P11836 297 aa6.66□□□□□ -1.34
PCDH9-201ENST00000377861 FHAD1B1AJZ9 1412 aa6.65□□□□□ -1.34
PCDH9-201ENST00000377861 WASHC2AQ641Q2 1341 aa6.65□□□□□ -1.34
PCDH9-201ENST00000377861 WASHC2CQ9Y4E1 1318 aa6.65□□□□□ -1.34
PCDH9-201ENST00000377861 PDE3BQ13370 1112 aa6.64□□□□□ -1.35
PCDH9-201ENST00000377861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.64□□□□□ -1.35
PCDH9-201ENST00000377861 CEP164Q9UPV0 1460 aa6.64□□□□□ -1.35
PCDH9-201ENST00000377861 UPF2Q9HAU5 1272 aaKnown RBP6.64□□□□□ -1.35
PCDH9-201ENST00000377861 DDRGK1Q96HY6 314 aa6.63□□□□□ -1.35
PCDH9-201ENST00000377861 EIF4G2P78344 907 aaKnown RBP eCLIP6.63□□□□□ -1.35
PCDH9-201ENST00000377861 KIF27Q86VH2 1401 aa6.62□□□□□ -1.35
PCDH9-201ENST00000377861 PNNQ9H307 717 aaKnown RBP6.62□□□□□ -1.35
PCDH9-201ENST00000377861 RB1CC1Q8TDY2 1594 aa6.62□□□□□ -1.35
PCDH9-201ENST00000377861 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.62□□□□□ -1.35
PCDH9-201ENST00000377861 HNRNPUL2Q1KMD3 747 aaKnown RBP6.62□□□□□ -1.35
PCDH9-201ENST00000377861 KTN1Q86UP2 1357 aaKnown RBP6.61□□□□□ -1.35
PCDH9-201ENST00000377861 ANP32BQ92688 251 aaKnown RBP6.61□□□□□ -1.35
PCDH9-201ENST00000377861 PPM1GO15355 546 aaPredicted RBP6.61□□□□□ -1.35
PCDH9-201ENST00000377861 PTMSP20962 102 aa6.6□□□□□ -1.35
PCDH9-201ENST00000377861 TSPY4P0CV99 314 aa6.6□□□□□ -1.35
PCDH9-201ENST00000377861 TSPY10P0CW01 314 aa6.6□□□□□ -1.35
PCDH9-201ENST00000377861 BAZ1AQ9NRL2 1556 aaPredicted RBP6.58□□□□□ -1.36
PCDH9-201ENST00000377861 GOLGA3Q08378 1498 aa6.58□□□□□ -1.36
PCDH9-201ENST00000377861 CLIP1P30622 1438 aa6.58□□□□□ -1.36
PCDH9-201ENST00000377861 ATP1B4Q9UN42 357 aaPredicted RBP6.57□□□□□ -1.36
PCDH9-201ENST00000377861 PPP4R2Q9NY27 417 aa6.57□□□□□ -1.36
PCDH9-201ENST00000377861 TMC1Q8TDI8 760 aa6.56□□□□□ -1.36
PCDH9-201ENST00000377861 CCNB3Q8WWL7 1395 aa6.56□□□□□ -1.36
PCDH9-201ENST00000377861 ROCK2O75116 1388 aaKnown RBP6.56□□□□□ -1.36
PCDH9-201ENST00000377861 PHLDB1Q86UU1 1377 aa6.56□□□□□ -1.36
PCDH9-201ENST00000377861 RALBP1Q15311 655 aa6.55□□□□□ -1.36
PCDH9-201ENST00000377861 PLPPR3Q6T4P5 718 aa6.55□□□□□ -1.36
PCDH9-201ENST00000377861 BAZ1BQ9UIG0 1483 aaKnown RBP6.55□□□□□ -1.36
PCDH9-201ENST00000377861 TONSLQ96HA7 1378 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms