RNA–Protein interactions for RNA: ENST00000516259.1

RNU6-390P-201, Transcript of RNA, U6 small nuclear 390, pseudogene, humanhuman

BASIC

Gene RNU6-390P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-390P-201ENST00000516259 CHIC1Q5VXU3 224 aa14.2□□□□□ -0.14
RNU6-390P-201ENST00000516259 AEBP2Q6ZN18 517 aaPredicted RBP14.09□□□□□ -0.15
RNU6-390P-201ENST00000516259 PHF23Q9BUL5 403 aaPredicted RBP12.45□□□□□ -0.42
RNU6-390P-201ENST00000516259 SENP3Q9H4L4 574 aaPredicted RBP12.01□□□□□ -0.49
RNU6-390P-201ENST00000516259 PLPPR3Q6T4P5 718 aa11.7□□□□□ -0.54
RNU6-390P-201ENST00000516259 FOXD1Q16676 465 aa11.02□□□□□ -0.65
RNU6-390P-201ENST00000516259 PPP6R1Q9UPN7 881 aa10.84□□□□□ -0.67
RNU6-390P-201ENST00000516259 ADRA2BP18089 450 aa10.82□□□□□ -0.68
RNU6-390P-201ENST00000516259 PIAS4Q8N2W9 510 aaPredicted RBP10.45□□□□□ -0.74
RNU6-390P-201ENST00000516259 KCNA4P22459 653 aa10.39□□□□□ -0.75
RNU6-390P-201ENST00000516259 PPP4R3CPQ6ZMV5 832 aa10.29□□□□□ -0.76
RNU6-390P-201ENST00000516259 NCBP3Q53F19 620 aaKnown RBP10.2□□□□□ -0.78
RNU6-390P-201ENST00000516259 MSH5O43196 834 aa10.12□□□□□ -0.79
RNU6-390P-201ENST00000516259 SCAF1Q9H7N4 1312 aaKnown RBP10.07□□□□□ -0.8
RNU6-390P-201ENST00000516259 CNKSR2Q8WXI2 1034 aa9.99□□□□□ -0.81
RNU6-390P-201ENST00000516259 SLC4A1APQ9BWU0 796 aaKnown RBP9.99□□□□□ -0.81
RNU6-390P-201ENST00000516259 NPM3O75607 178 aaKnown RBP9.97□□□□□ -0.81
RNU6-390P-201ENST00000516259 EHMT2Q96KQ7 1210 aa9.97□□□□□ -0.81
RNU6-390P-201ENST00000516259 DNAJC5BQ9UF47 199 aa9.9□□□□□ -0.82
RNU6-390P-201ENST00000516259 CSRNP3Q8WYN3 585 aa9.83□□□□□ -0.84
RNU6-390P-201ENST00000516259 RNF216Q9NWF9 866 aaPredicted RBP9.73□□□□□ -0.85
RNU6-390P-201ENST00000516259 MAPK8IP2Q13387 824 aaPredicted RBP9.69□□□□□ -0.86
RNU6-390P-201ENST00000516259 DMRT2Q9Y5R5 561 aa9.64□□□□□ -0.87
RNU6-390P-201ENST00000516259 HOXD11P31277 338 aaPredicted RBP9.61□□□□□ -0.87
RNU6-390P-201ENST00000516259 ZBTB22O15209 634 aa9.56□□□□□ -0.88
RNU6-390P-201ENST00000516259 FOXD4L1Q9NU39 408 aa9.55□□□□□ -0.88
RNU6-390P-201ENST00000516259 SLC4A2P04920 1241 aa9.33□□□□□ -0.92
RNU6-390P-201ENST00000516259 ATXN8OSP0DMR3 200 aa9.3□□□□□ -0.92
RNU6-390P-201ENST00000516259 MYCNP04198 464 aaPredicted RBP9.26□□□□□ -0.93
RNU6-390P-201ENST00000516259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.09□□□□□ -0.95
RNU6-390P-201ENST00000516259 HNRNPUL2Q1KMD3 747 aaKnown RBP9.09□□□□□ -0.95
RNU6-390P-201ENST00000516259 SAMD1Q6SPF0 538 aaPredicted RBP9.04□□□□□ -0.96
RNU6-390P-201ENST00000516259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.04□□□□□ -0.96
RNU6-390P-201ENST00000516259 DCAF8L1A6NGE4 600 aa9□□□□□ -0.97
RNU6-390P-201ENST00000516259 U3KPZ7 1027 aaPredicted RBP8.95□□□□□ -0.98
RNU6-390P-201ENST00000516259 APLP2Q06481 763 aa8.92□□□□□ -0.98
RNU6-390P-201ENST00000516259 ATF5Q9Y2D1 282 aaPredicted RBP8.86□□□□□ -0.99
RNU6-390P-201ENST00000516259 FKBP8Q14318 412 aa8.81□□□□□ -1
RNU6-390P-201ENST00000516259 ZNF219Q9P2Y4 722 aaPredicted RBP8.76□□□□□ -1.01
RNU6-390P-201ENST00000516259 AMER1Q5JTC6 1135 aaPredicted RBP8.75□□□□□ -1.01
RNU6-390P-201ENST00000516259 RNF39Q9H2S5 420 aa8.68□□□□□ -1.02
RNU6-390P-201ENST00000516259 C1QBPQ07021 282 aaKnown RBP8.65□□□□□ -1.02
RNU6-390P-201ENST00000516259 RTN4Q9NQC3 1192 aaKnown RBP8.61□□□□□ -1.03
RNU6-390P-201ENST00000516259 FBLN2P98095 1184 aa8.57□□□□□ -1.04
RNU6-390P-201ENST00000516259 PROM2Q8N271 834 aa8.57□□□□□ -1.04
RNU6-390P-201ENST00000516259 FBXO3Q9UK99 471 aa8.55□□□□□ -1.04
RNU6-390P-201ENST00000516259 MKRN4PQ13434 485 aaPredicted RBP8.54□□□□□ -1.04
RNU6-390P-201ENST00000516259 ZBTB12Q9Y330 459 aaPredicted RBP8.54□□□□□ -1.04
RNU6-390P-201ENST00000516259 SPDYE4A6NLX3 237 aa8.53□□□□□ -1.04
RNU6-390P-201ENST00000516259 SPINK5Q9NQ38 1064 aaPredicted RBP8.53□□□□□ -1.04
RNU6-390P-201ENST00000516259 TRHP20396 242 aaPredicted RBP8.51□□□□□ -1.05
RNU6-390P-201ENST00000516259 POLA2Q14181 598 aa8.51□□□□□ -1.05
RNU6-390P-201ENST00000516259 POTEDQ86YR6 584 aa8.51□□□□□ -1.05
RNU6-390P-201ENST00000516259 CAPN15O75808 1086 aa8.48□□□□□ -1.05
RNU6-390P-201ENST00000516259 SLC24A1O60721 1099 aa8.4□□□□□ -1.06
RNU6-390P-201ENST00000516259 DSG3P32926 999 aa8.35□□□□□ -1.07
RNU6-390P-201ENST00000516259 VASPP50552 380 aaPredicted RBP8.34□□□□□ -1.07
RNU6-390P-201ENST00000516259 SPDYE2BA6NHP3 402 aa8.31□□□□□ -1.08
RNU6-390P-201ENST00000516259 SPDYE6P0CI01 402 aa8.31□□□□□ -1.08
RNU6-390P-201ENST00000516259 SPDYE2Q495Y8 402 aa8.31□□□□□ -1.08
RNU6-390P-201ENST00000516259 ABCB7O75027 752 aa8.3□□□□□ -1.08
RNU6-390P-201ENST00000516259 SSUH2Q9Y2M2 353 aa8.27□□□□□ -1.09
RNU6-390P-201ENST00000516259 STAG3Q9UJ98 1225 aa8.26□□□□□ -1.09
RNU6-390P-201ENST00000516259 IFNLR1Q8IU57 520 aaPredicted RBP8.24□□□□□ -1.09
RNU6-390P-201ENST00000516259 ZNF692Q9BU19 519 aaPredicted RBP8.23□□□□□ -1.09
RNU6-390P-201ENST00000516259 OSCARQ8IYS5 282 aa8.17□□□□□ -1.1
RNU6-390P-201ENST00000516259 PABPN1Q86U42 306 aaKnown RBP eCLIP8.12□□□□□ -1.11
RNU6-390P-201ENST00000516259 SPOCK2Q92563 424 aa8.12□□□□□ -1.11
RNU6-390P-201ENST00000516259 CACNB1Q02641 598 aaPredicted RBP8.11□□□□□ -1.11
RNU6-390P-201ENST00000516259 PKD2Q13563 968 aa8.11□□□□□ -1.11
RNU6-390P-201ENST00000516259 ZBTB47Q9UFB7 747 aaPredicted RBP8.07□□□□□ -1.12
RNU6-390P-201ENST00000516259 KLHL34Q8N239 644 aa8.05□□□□□ -1.12
RNU6-390P-201ENST00000516259 PLEKHG5O94827 1062 aa8.04□□□□□ -1.12
RNU6-390P-201ENST00000516259 PLCB2Q00722 1185 aa8.04□□□□□ -1.12
RNU6-390P-201ENST00000516259 PLCD3Q8N3E9 789 aa8.04□□□□□ -1.12
RNU6-390P-201ENST00000516259 MIER1Q8N108 512 aa8.02□□□□□ -1.13
RNU6-390P-201ENST00000516259 RBM42Q9BTD8 480 aaKnown RBP8.02□□□□□ -1.13
RNU6-390P-201ENST00000516259 TRIM41Q8WV44 630 aa7.99□□□□□ -1.13
RNU6-390P-201ENST00000516259 AKT1S1Q96B36 256 aa7.98□□□□□ -1.13
RNU6-390P-201ENST00000516259 ECM2O94769 699 aaPredicted RBP7.96□□□□□ -1.14
RNU6-390P-201ENST00000516259 SPDYE1Q8NFV5 336 aaPredicted RBP7.95□□□□□ -1.14
RNU6-390P-201ENST00000516259 BBXQ8WY36 941 aaPredicted RBP7.94□□□□□ -1.14
RNU6-390P-201ENST00000516259 DCAF8L2P0C7V8 631 aa7.89□□□□□ -1.15
RNU6-390P-201ENST00000516259 GSE1Q14687 1217 aa7.89□□□□□ -1.15
RNU6-390P-201ENST00000516259 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.89□□□□□ -1.15
RNU6-390P-201ENST00000516259 VSIG10Q8N0Z9 540 aa7.87□□□□□ -1.15
RNU6-390P-201ENST00000516259 RGL2O15211 777 aa7.86□□□□□ -1.15
RNU6-390P-201ENST00000516259 DNAJC5Q9H3Z4 198 aa7.85□□□□□ -1.15
RNU6-390P-201ENST00000516259 NUBP1P53384 320 aa7.84□□□□□ -1.15
RNU6-390P-201ENST00000516259 REM2Q8IYK8 340 aaPredicted RBP7.84□□□□□ -1.15
RNU6-390P-201ENST00000516259 TAOK2Q9UL54 1235 aa7.83□□□□□ -1.16
RNU6-390P-201ENST00000516259 CIZ1Q9ULV3 898 aaPredicted RBP7.83□□□□□ -1.16
RNU6-390P-201ENST00000516259 NPM1P06748 294 aaKnown RBP eCLIP7.82□□□□□ -1.16
RNU6-390P-201ENST00000516259 PRR29P0C7W0 189 aa7.81□□□□□ -1.16
RNU6-390P-201ENST00000516259 CHRM1P11229 460 aaPredicted RBP7.81□□□□□ -1.16
RNU6-390P-201ENST00000516259 MNX1P50219 401 aaPredicted RBP7.81□□□□□ -1.16
RNU6-390P-201ENST00000516259 HAP1P54257 671 aaPredicted RBP7.81□□□□□ -1.16
RNU6-390P-201ENST00000516259 CREBZFQ9NS37 354 aa7.81□□□□□ -1.16
RNU6-390P-201ENST00000516259 HS6ST3Q8IZP7 471 aa7.79□□□□□ -1.16
RNU6-390P-201ENST00000516259 SPRYD3Q8NCJ5 442 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms