Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-767P-201ENST00000384132 107 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RNU6-882P-201ENST00000391025 103 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AL359634.1-202ENST00000404721 284 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RNU6-193P-201ENST00000410977 107 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 EEF1A1P40-201ENST00000412883 573 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 OR6C66P-201ENST00000414917 930 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AL590139.1-201ENST00000416267 400 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC119751.6-201ENST00000416712 186 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 SSXP9-201ENST00000417503 292 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RPL36AP53-201ENST00000432891 316 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 TDGF1P1-201ENST00000445734 527 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC079168.2-201ENST00000453977 416 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RPS29P22-201ENST00000472363 168 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RPL39P36-201ENST00000490784 156 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 MTCO2P30-201ENST00000503662 364 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 MTND3P22-201ENST00000510932 243 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RNU6-840P-201ENST00000517275 65 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 DEFB109D-201ENST00000529497 240 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC010680.3-201ENST00000604215 520 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC025034.2-201ENST00000623264 286 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 AL359922.3-201ENST00000624779 1670 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.67□□□□□ -1.66
TRIM39Q9HCM9 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC079741.1-201ENST00000321498 212 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AL590240.1-201ENST00000334118 313 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC110754.1-201ENST00000399740 601 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC068533.1-201ENST00000418542 415 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC140479.3-201ENST00000418944 1126 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 PPP1R11P2-201ENST00000423543 382 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 CKS1BP6-201ENST00000424932 240 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 RPL7L1P8-201ENST00000469911 741 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC010631.1-201ENST00000474150 156 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 VN1R104P-201ENST00000505115 1009 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 MTCO1P35-201ENST00000515270 228 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 RN7SKP219-201ENST00000516825 296 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC134698.5-201ENST00000519444 336 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 SUB1P1-201ENST00000524415 382 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 MIR4700-201ENST00000578311 74 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 MIR4719-201ENST00000585233 84 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 XIAPP1-201ENST00000603162 600 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC093913.1-201ENST00000614178 329 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC100810.6-201ENST00000638068 285 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC139769.1-204ENST00000472297 1931 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 AC004925.1-201ENST00000624256 2706 ntBASIC4.66□□□□□ -1.66
TRIM39Q9HCM9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM39Q9HCM9 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.65□□□□□ -1.66
TRIM39Q9HCM9 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM39Q9HCM9 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
TRIM39Q9HCM9 AL136164.3-201ENST00000624429 3978 ntBASIC4.65□□□□□ -1.66
TRIM39Q9HCM9 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 AC067945.1-201ENST00000342609 618 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 RNU6-188P-201ENST00000364207 107 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 RNU6-1029P-201ENST00000384109 107 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 ARL4AP5-201ENST00000404372 599 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 AP000580.1-201ENST00000404439 358 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 AL606923.1-201ENST00000406616 190 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 AC244098.2-201ENST00000422068 99 ntBASIC4.65□□□□□ -1.67
TRIM39Q9HCM9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms