RNA–Protein interactions for RNA: ENST00000517275.3

RNU6-840P-201, Transcript of RNA, U6 small nuclear 840, pseudogene, humanhuman

BASIC

Gene RNU6-840P, Length 65 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-840P-201ENST00000517275 CHIC1Q5VXU3 224 aa13.41□□□□□ -0.26
RNU6-840P-201ENST00000517275 AEBP2Q6ZN18 517 aaPredicted RBP13.24□□□□□ -0.29
RNU6-840P-201ENST00000517275 PHF23Q9BUL5 403 aaPredicted RBP11.79□□□□□ -0.52
RNU6-840P-201ENST00000517275 SENP3Q9H4L4 574 aaPredicted RBP11.22□□□□□ -0.61
RNU6-840P-201ENST00000517275 PLPPR3Q6T4P5 718 aa11.07□□□□□ -0.64
RNU6-840P-201ENST00000517275 FOXD1Q16676 465 aa10.3□□□□□ -0.76
RNU6-840P-201ENST00000517275 ADRA2BP18089 450 aa10.25□□□□□ -0.77
RNU6-840P-201ENST00000517275 PPP6R1Q9UPN7 881 aa10.22□□□□□ -0.77
RNU6-840P-201ENST00000517275 KCNA4P22459 653 aa10.01□□□□□ -0.81
RNU6-840P-201ENST00000517275 PIAS4Q8N2W9 510 aaPredicted RBP9.79□□□□□ -0.84
RNU6-840P-201ENST00000517275 PPP4R3CPQ6ZMV5 832 aa9.76□□□□□ -0.85
RNU6-840P-201ENST00000517275 EHMT2Q96KQ7 1210 aa9.73□□□□□ -0.85
RNU6-840P-201ENST00000517275 NCBP3Q53F19 620 aaKnown RBP9.65□□□□□ -0.86
RNU6-840P-201ENST00000517275 SLC4A1APQ9BWU0 796 aaKnown RBP9.61□□□□□ -0.87
RNU6-840P-201ENST00000517275 CSRNP3Q8WYN3 585 aa9.53□□□□□ -0.88
RNU6-840P-201ENST00000517275 NPM3O75607 178 aaKnown RBP9.51□□□□□ -0.89
RNU6-840P-201ENST00000517275 CNKSR2Q8WXI2 1034 aa9.44□□□□□ -0.9
RNU6-840P-201ENST00000517275 DNAJC5BQ9UF47 199 aa9.42□□□□□ -0.9
RNU6-840P-201ENST00000517275 SCAF1Q9H7N4 1312 aaKnown RBP9.4□□□□□ -0.9
RNU6-840P-201ENST00000517275 MSH5O43196 834 aa9.39□□□□□ -0.91
RNU6-840P-201ENST00000517275 ZBTB22O15209 634 aa9.25□□□□□ -0.93
RNU6-840P-201ENST00000517275 RNF216Q9NWF9 866 aaPredicted RBP9.17□□□□□ -0.94
RNU6-840P-201ENST00000517275 FOXD4L1Q9NU39 408 aa9.15□□□□□ -0.94
RNU6-840P-201ENST00000517275 MAPK8IP2Q13387 824 aaPredicted RBP9.09□□□□□ -0.95
RNU6-840P-201ENST00000517275 HOXD11P31277 338 aaPredicted RBP9.05□□□□□ -0.96
RNU6-840P-201ENST00000517275 DMRT2Q9Y5R5 561 aa9.03□□□□□ -0.96
RNU6-840P-201ENST00000517275 SLC4A2P04920 1241 aa8.88□□□□□ -0.99
RNU6-840P-201ENST00000517275 ATXN8OSP0DMR3 200 aa8.86□□□□□ -0.99
RNU6-840P-201ENST00000517275 MYCNP04198 464 aaPredicted RBP8.82□□□□□ -1
RNU6-840P-201ENST00000517275 AMER1Q5JTC6 1135 aaPredicted RBP8.63□□□□□ -1.03
RNU6-840P-201ENST00000517275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.55□□□□□ -1.04
RNU6-840P-201ENST00000517275 HNRNPUL2Q1KMD3 747 aaKnown RBP8.55□□□□□ -1.04
RNU6-840P-201ENST00000517275 RTN4Q9NQC3 1192 aaKnown RBP8.54□□□□□ -1.04
RNU6-840P-201ENST00000517275 FKBP8Q14318 412 aa8.53□□□□□ -1.04
RNU6-840P-201ENST00000517275 SAMD1Q6SPF0 538 aaPredicted RBP8.53□□□□□ -1.04
RNU6-840P-201ENST00000517275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.47□□□□□ -1.05
RNU6-840P-201ENST00000517275 U3KPZ7 1027 aaPredicted RBP8.47□□□□□ -1.05
RNU6-840P-201ENST00000517275 ATF5Q9Y2D1 282 aaPredicted RBP8.46□□□□□ -1.06
RNU6-840P-201ENST00000517275 SLC24A1O60721 1099 aa8.45□□□□□ -1.06
RNU6-840P-201ENST00000517275 DCAF8L1A6NGE4 600 aa8.4□□□□□ -1.06
RNU6-840P-201ENST00000517275 APLP2Q06481 763 aa8.36□□□□□ -1.07
RNU6-840P-201ENST00000517275 ZNF219Q9P2Y4 722 aaPredicted RBP8.3□□□□□ -1.08
RNU6-840P-201ENST00000517275 PROM2Q8N271 834 aa8.25□□□□□ -1.09
RNU6-840P-201ENST00000517275 FBXO3Q9UK99 471 aa8.2□□□□□ -1.1
RNU6-840P-201ENST00000517275 MKRN4PQ13434 485 aaPredicted RBP8.16□□□□□ -1.1
RNU6-840P-201ENST00000517275 SPDYE4A6NLX3 237 aa8.15□□□□□ -1.1
RNU6-840P-201ENST00000517275 FBLN2P98095 1184 aa8.1□□□□□ -1.11
RNU6-840P-201ENST00000517275 RNF39Q9H2S5 420 aa8.09□□□□□ -1.11
RNU6-840P-201ENST00000517275 VASPP50552 380 aaPredicted RBP8.06□□□□□ -1.12
RNU6-840P-201ENST00000517275 ZBTB12Q9Y330 459 aaPredicted RBP8.04□□□□□ -1.12
RNU6-840P-201ENST00000517275 SPINK5Q9NQ38 1064 aaPredicted RBP8.03□□□□□ -1.12
RNU6-840P-201ENST00000517275 C1QBPQ07021 282 aaKnown RBP8.02□□□□□ -1.13
RNU6-840P-201ENST00000517275 POLA2Q14181 598 aa8.01□□□□□ -1.13
RNU6-840P-201ENST00000517275 TRHP20396 242 aaPredicted RBP7.99□□□□□ -1.13
RNU6-840P-201ENST00000517275 IFNLR1Q8IU57 520 aaPredicted RBP7.96□□□□□ -1.14
RNU6-840P-201ENST00000517275 CAPN15O75808 1086 aa7.94□□□□□ -1.14
RNU6-840P-201ENST00000517275 PLCB2Q00722 1185 aa7.93□□□□□ -1.14
RNU6-840P-201ENST00000517275 PKD2Q13563 968 aa7.88□□□□□ -1.15
RNU6-840P-201ENST00000517275 SSUH2Q9Y2M2 353 aa7.86□□□□□ -1.15
RNU6-840P-201ENST00000517275 SPDYE2BA6NHP3 402 aa7.84□□□□□ -1.15
RNU6-840P-201ENST00000517275 SPDYE6P0CI01 402 aa7.84□□□□□ -1.15
RNU6-840P-201ENST00000517275 SPDYE2Q495Y8 402 aa7.84□□□□□ -1.15
RNU6-840P-201ENST00000517275 STAG3Q9UJ98 1225 aa7.84□□□□□ -1.15
RNU6-840P-201ENST00000517275 ABCB7O75027 752 aa7.82□□□□□ -1.16
RNU6-840P-201ENST00000517275 DSG3P32926 999 aa7.81□□□□□ -1.16
RNU6-840P-201ENST00000517275 SPOCK2Q92563 424 aa7.8□□□□□ -1.16
RNU6-840P-201ENST00000517275 ZNF692Q9BU19 519 aaPredicted RBP7.77□□□□□ -1.17
RNU6-840P-201ENST00000517275 OSCARQ8IYS5 282 aa7.75□□□□□ -1.17
RNU6-840P-201ENST00000517275 POTEDQ86YR6 584 aa7.73□□□□□ -1.17
RNU6-840P-201ENST00000517275 VSIG10Q8N0Z9 540 aa7.71□□□□□ -1.18
RNU6-840P-201ENST00000517275 BBXQ8WY36 941 aaPredicted RBP7.71□□□□□ -1.18
RNU6-840P-201ENST00000517275 ECM2O94769 699 aaPredicted RBP7.69□□□□□ -1.18
RNU6-840P-201ENST00000517275 DCAF8L2P0C7V8 631 aa7.69□□□□□ -1.18
RNU6-840P-201ENST00000517275 HAP1P54257 671 aaPredicted RBP7.69□□□□□ -1.18
RNU6-840P-201ENST00000517275 PABPN1Q86U42 306 aaKnown RBP eCLIP7.69□□□□□ -1.18
RNU6-840P-201ENST00000517275 KLHL34Q8N239 644 aa7.69□□□□□ -1.18
RNU6-840P-201ENST00000517275 PLCD3Q8N3E9 789 aa7.67□□□□□ -1.18
RNU6-840P-201ENST00000517275 ZBTB47Q9UFB7 747 aaPredicted RBP7.67□□□□□ -1.18
RNU6-840P-201ENST00000517275 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.66□□□□□ -1.18
RNU6-840P-201ENST00000517275 TRIM41Q8WV44 630 aa7.65□□□□□ -1.18
RNU6-840P-201ENST00000517275 BCANQ96GW7 911 aa7.65□□□□□ -1.18
RNU6-840P-201ENST00000517275 RGL2O15211 777 aa7.63□□□□□ -1.19
RNU6-840P-201ENST00000517275 NPM1P06748 294 aaKnown RBP eCLIP7.63□□□□□ -1.19
RNU6-840P-201ENST00000517275 MIER1Q8N108 512 aa7.61□□□□□ -1.19
RNU6-840P-201ENST00000517275 PLEKHG5O94827 1062 aa7.6□□□□□ -1.19
RNU6-840P-201ENST00000517275 DNAJC5Q9H3Z4 198 aa7.6□□□□□ -1.19
RNU6-840P-201ENST00000517275 KDM2AQ9Y2K7 1162 aa7.55□□□□□ -1.2
RNU6-840P-201ENST00000517275 PAXIP1Q6ZW49 1069 aaPredicted RBP7.54□□□□□ -1.2
RNU6-840P-201ENST00000517275 HS6ST3Q8IZP7 471 aa7.54□□□□□ -1.2
RNU6-840P-201ENST00000517275 SPRYD3Q8NCJ5 442 aa7.54□□□□□ -1.2
RNU6-840P-201ENST00000517275 GSE1Q14687 1217 aa7.51□□□□□ -1.21
RNU6-840P-201ENST00000517275 TAOK2Q9UL54 1235 aa7.51□□□□□ -1.21
RNU6-840P-201ENST00000517275 CIZ1Q9ULV3 898 aaPredicted RBP7.5□□□□□ -1.21
RNU6-840P-201ENST00000517275 NUBP1P53384 320 aa7.49□□□□□ -1.21
RNU6-840P-201ENST00000517275 CFAP44Q96MT7 982 aa7.49□□□□□ -1.21
RNU6-840P-201ENST00000517275 CHGAP10645 457 aaKnown RBP7.48□□□□□ -1.21
RNU6-840P-201ENST00000517275 RNF25Q96BH1 459 aaPredicted RBP7.48□□□□□ -1.21
RNU6-840P-201ENST00000517275 SPDYE1Q8NFV5 336 aaPredicted RBP7.47□□□□□ -1.21
RNU6-840P-201ENST00000517275 RBM42Q9BTD8 480 aaKnown RBP7.47□□□□□ -1.21
RNU6-840P-201ENST00000517275 AKT1S1Q96B36 256 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms