Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 AC026366.1-201ENST00000488803 879 ntBASIC17.1■□□□□ 0.33
VSX1Q9NZR4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 RNA5SP413-201ENST00000516373 109 ntBASIC17.1■□□□□ 0.33
VSX1Q9NZR4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 MTDHP1-201ENST00000605323 784 ntBASIC17.1■□□□□ 0.33
VSX1Q9NZR4 AC069544.1-201ENST00000609399 999 ntBASIC17.1■□□□□ 0.33
VSX1Q9NZR4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX1Q9NZR4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 KRT17P3-201ENST00000420566 1262 ntBASIC17.09■□□□□ 0.33
VSX1Q9NZR4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 C1QL1P1-201ENST00000568105 661 ntBASIC17.09■□□□□ 0.33
VSX1Q9NZR4 AC004264.1-201ENST00000608354 794 ntBASIC17.09■□□□□ 0.33
VSX1Q9NZR4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 AL138781.2-201ENST00000617896 1843 ntBASIC17.09■□□□□ 0.33
VSX1Q9NZR4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX1Q9NZR4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VSX1Q9NZR4 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.08■□□□□ 0.33
VSX1Q9NZR4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.08■□□□□ 0.32
VSX1Q9NZR4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 FEM1AP3-201ENST00000403722 1741 ntBASIC17.07■□□□□ 0.32
VSX1Q9NZR4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms